| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,852,962 – 13,853,058 |
| Length | 96 |
| Max. P | 0.743736 |
| Location | 13,852,962 – 13,853,058 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.87 |
| Mean single sequence MFE | -19.05 |
| Consensus MFE | -11.18 |
| Energy contribution | -12.99 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13852962 96 + 20766785 A-AAAAA-AACG-AAAACACGCUAUGCUGUAGCGCGCAAAAAAG-GGCGAACAUUCGAACCAACCCACCCCACUCCACGCCACCCCACAAAUUUUGCAUU .-.....-....-......((((((...)))))).((((((...-((((............................))))..........))))))... ( -12.71) >DroSec_CAF1 153110 99 + 1 A-ACAAAGAGCAGAAAACACGCUAUGCUUUGGCGUGCAAAAAGGGGGCGAACAUUCGAAACAACCCACCCCACUCCACGCCACCCCAUACAUUUUGCAUU .-.......((((((..(((((((.....)))))))......(((((((............................)))).)))......))))))... ( -25.49) >DroSim_CAF1 158389 99 + 1 ACACAAAGAGCAGA-AACACGCUAUGCUUUGGCGUGCAAAAAAGGGGCGAACAUUCAAACCAACCCACCCCACUCCACGCCACCCCACAAAUUUUGCAUU .........(((((-(.(((((((.....))))))).......((((.(................).))))....................))))))... ( -22.49) >DroEre_CAF1 154282 80 + 1 A--CAAAGAGCA-AAAACACGGUAUGAUGUAGCGUGCAAAAA--GGGCGAGCAUUCGAACC------CCCC---------UACACCAUAAAUUUUGCAUU .--......(((-(((.((((.(((...))).)))).....(--(((((......))....------.)))---------)..........))))))... ( -15.50) >consensus A_ACAAAGAGCA_AAAACACGCUAUGCUGUAGCGUGCAAAAAAGGGGCGAACAUUCGAACCAACCCACCCCACUCCACGCCACCCCACAAAUUUUGCAUU .........((((((..(((((((.....))))))).......((((.(................).))))....................))))))... (-11.18 = -12.99 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:28 2006