Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,851,464 – 13,851,558 |
Length | 94 |
Max. P | 0.521275 |
Location | 13,851,464 – 13,851,558 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.42 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -17.80 |
Energy contribution | -17.68 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -1.52 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13851464 94 + 20766785 GAAGCGUUUAGGUCGGCUAAUGCCCCCUAAUAUGCUCAACUUCCUUUCCGGUUUGGGGAGCAUUAAAUAUCCCCUAC---UC------CCCCCCUUUUGGGUG ((.(((((((((..(((....))).))))).))))))............((...(((((..........)))))...---.)------)..(((....))).. ( -28.40) >DroSec_CAF1 151639 98 + 1 UAAGCGUUUAGGUCGGCUAAUGCCCCCUAAUAUGCUCAACUUCCUUUCCGGUUUGGGGGGCAUUAAAUAUCCCCAAC---CC--CCCCCCCCCCCCUUGGGAG ..((((((((((..(((....))).))))).)))))...(((((.....((...((((((.................---))--))))...)).....))))) ( -32.43) >DroSim_CAF1 156884 101 + 1 GAAGCGUUUAGGUCGGCUAAUGCUCCCUAAUAUGCUCAACUUCCUUUCCGGUUUGGGAGGCAUUAAAUAUCCCCACUCCCCC--CCCCCCCCCCCCUUGGGUG ((.(((((((((..(((....))).))))).))))))............((...(((((................)))))..--.))..(((......))).. ( -24.29) >DroEre_CAF1 152716 90 + 1 GAAGCGUUUAGGUCGGCUAAUGCCCCUUAAUGUGCUCAACUUCCUUUCCGGUUUGGGGGUC-UCGAAUAUGCCCAUC---UCCC---------CCCUUUUGUG ((.(((((.(((..(((....)))))).)))))..)).................(((((..-...............---.)))---------))........ ( -20.47) >DroYak_CAF1 157036 99 + 1 GAAGCGUUUAGGUCGGCUAAUGCCCCUUAAUAUGCUCAACUUCCCUUCCGGUUUGGGGGCC-ACAAAUAUCCCCAUC---UUCCCCUCCCUCCCCUUUUUGUG ((.(((((((((..(((....))).))))).))))))............((..((((((..-.......))))))..---..))................... ( -21.10) >consensus GAAGCGUUUAGGUCGGCUAAUGCCCCCUAAUAUGCUCAACUUCCUUUCCGGUUUGGGGGGCAUUAAAUAUCCCCAAC___UC__CC_CCCCCCCCCUUGGGUG ..((((((((((..(((....))).))))).))))).................((((((..........))))))............................ (-17.80 = -17.68 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:27 2006