Locus 4214

Sequence ID 2R_DroMel_CAF1
Location 13,850,753 – 13,850,846
Length 93
Max. P 0.540738
window6770

overview

Window 0

Location 13,850,753 – 13,850,846
Length 93
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.68
Mean single sequence MFE -27.10
Consensus MFE -20.93
Energy contribution -20.23
Covariance contribution -0.69
Combinations/Pair 1.12
Mean z-score -1.38
Structure conservation index 0.77
SVM decision value 0.01
SVM RNA-class probability 0.540738
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13850753 93 + 20766785
-UGUGUGUGU--------GUU--------GUUGUGCCGUAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAAU-GAAAUUUUUGGU
-(((.(((((--------((.--------.(((((((((............)))))))......((((....)))).))..)))))))))).(((((.-.......))))) ( -26.80)
>DroPse_CAF1 149383 97 + 1
UUGCAUGUGC--U----CUCU--------GUUGUGUCGCAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAACCGAAAACCGACGU
..((....))--.----.((.--------((((((((((.....((((((.((((((((....))).....)))))))))))...))))))...)))).)).......... ( -23.00)
>DroSim_CAF1 156189 94 + 1
-UGUGUGUGU-------UGCU--------GUUGUGCCGCAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAAU-GAAAUUUUUGGU
-(((((((((-------..((--------...(((((((.(((.....))))))))))......((((....)))).))..)))))).))).(((((.-.......))))) ( -31.50)
>DroEre_CAF1 151957 98 + 1
-UAUG--UGUGCAGUCGUGUU--------GUUGUGCCGUAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAAU-GAAAU-UUUUGU
-..((--..(((.(.(((((.--------.(((((((((............)))))))......((((....)))).))..)))))).)))...))..-.....-...... ( -27.30)
>DroYak_CAF1 156299 109 + 1
-UGUGUGUGUGCAGUCGUGUUGUUGUGUUGUUGUGCCGUAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAAU-GAAAUGUUUCGU
-.((((((.(((((.(..(((((..(......(((((((............)))))))...)..)))))..))))))....)))))).........((-(((....))))) ( -29.20)
>DroPer_CAF1 149979 97 + 1
UUGCAUGUGC--U----CUCU--------GUUGUGUCGCAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAACCGAAAAACGCCGU
.(((((.(((--.----..((--------(....(((((.(((.....))))))))(((....)))...)))..))).))).)).(((((................))))) ( -24.79)
>consensus
_UGUGUGUGU_______UGCU________GUUGUGCCGCAUAAAUUAUUUAGCGGCGCCUAAUGGCAAUUAGUUGCAAGUGACACGCGGCAAAUCAAU_GAAAUUUUUCGU
.............................((((((((((.....((((((.((((((((....))).....)))))))))))...))))))...))))............. (-20.93 = -20.23 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:26 2006