Locus 4213

Sequence ID 2R_DroMel_CAF1
Location 13,846,373 – 13,846,484
Length 111
Max. P 0.647474
window6769

overview

Window 9

Location 13,846,373 – 13,846,484
Length 111
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 72.25
Mean single sequence MFE -21.08
Consensus MFE -10.66
Energy contribution -10.94
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.51
SVM decision value 0.24
SVM RNA-class probability 0.647474
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13846373 111 - 20766785
CAAUGUUUUAUUGCAAUUA--UUUGCCAGCAGAGUUCAUUGGAAGCCGAAACUUACUGCAUCCACUUUGCAUGCCAAAAACUUUGAAUAAUGCCAAAAUAUUUUGGCCUGACC
(((.(((((...((((...--.))))..(((((((.....(((.((.(.......).)).))))))))))......))))).)))......((((((....))))))...... ( -24.50)
>DroSec_CAF1 146611 106 - 1
---UGUA-UUUUGCAAUUA--UCCGUCAGCAGAGUUCAUUGGAAGCAGAAACUUACUGCAU-CACUUUGCACACCAAAAACUUAGCAUAAUGCCAAAAUAUUUUGGCCCGGCC
---....-...........--.(((...((.(((((..(((((((......)))..((((.-.....))))..)))).))))).)).....((((((....)))))).))).. ( -21.70)
>DroSim_CAF1 151895 93 - 1
-----------------UA--UCCGUCAGCAAAGUUCAUUGAAAGCCGAAACUUUCUGCAU-CACUUUGCACACCAAAAACUUAGCAUAAUGCCAAAAUAUUUUGGCCCGGCU
-----------------..--...(((.(((((((.....(((((......))))).....-.))))))).....................((((((....))))))..))). ( -21.40)
>DroEre_CAF1 147610 90 - 1
CAAUAUUUUAUUGCAAUUA--UUCG-----------CAUUGCAAGUCGAAACUUACUGCAU-CACUCUGCAUAGCGAC---------AAAUGCCAAAAUAUUUUGGCCAGGCC
..........(((((((..--....-----------.)))))))((((...((...((((.-.....)))).))))))---------....((((((....))))))...... ( -18.30)
>DroYak_CAF1 151863 103 - 1
CAAUAUUUUAUUGCAAUUACAUCCGCAGGCAGAGUUCAUUGAAAGCCAAAACCGACUGCAU-CACUUUGCAUACCGAC---------UAAUGCCAAAAUAUUUUGGCCAGGCC
(((((((((.((((..........))))..)))))..))))...(((.....((..((((.-.....))))...))..---------....((((((....))))))..))). ( -19.50)
>consensus
CAAUAUUUUAUUGCAAUUA__UCCGCCAGCAGAGUUCAUUGAAAGCCGAAACUUACUGCAU_CACUUUGCAUACCAAAAACUU_G_AUAAUGCCAAAAUAUUUUGGCCAGGCC
............................................(((.........((((.......))))....................((((((....))))))..))). (-10.66 = -10.94 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:25 2006