| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,840,323 – 13,840,428 |
| Length | 105 |
| Max. P | 0.642603 |
| Location | 13,840,323 – 13,840,428 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.26 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -15.10 |
| Energy contribution | -16.98 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13840323 105 - 20766785 AAGUUUGGGA------AAAGUUUCGGCUUAGGAAAUGGGAUUAACCAGUUUUCGAAGUUUUAGUUAAGUUCCAAGCAGAGUCACCUAAGUUUUCACACACAAAGACAAACA ..((((((((------........(((((.((((((((......))).))))).))))).........))))))))............(((((........)))))..... ( -20.93) >DroSec_CAF1 140646 100 - 1 AAGUUUGGCA------GACGUUUGGGCUUAGGAAAUGGGAUUAACCAGUUUUCUAAGUUUUAGUUAAGUUCC----AGAGUCACUUAAGUUUUCACACAUUAAGAC-AACA ..(((.(...------(((.((((((((((((((((((......))).))))))))))............))----)))))).(((((((......)).))))).)-))). ( -22.20) >DroSim_CAF1 145914 105 - 1 AAGUUUGGGA------AAAGUUCGGGCUUAGGAAAUGGGAUUAACCAGUAUUCUAAGUUUUAAUUAAGUUCCAAGCAGAGUCAUUUAAGUUUUCAAACAUAAAGACUAACA ..((((((((------..((((..(((((((((..(((......)))...)))))))))..))))...))))))))..((((.((((.(((....))).)))))))).... ( -31.10) >DroEre_CAF1 141449 99 - 1 AAGUUUGGGAACUGCGAAAGUUUCGGCUAAGGAAAUGGGGUUAACCAGUCUCCUAAGUUUUGGUUAAGUUCCAAGCAGAGUCACUUAAGUUUUCA------------UACA ..((.((..((((((....))...((((...(...(((((((((((((.((....))..)))))))).)))))..)..)))).....))))..))------------.)). ( -27.60) >DroYak_CAF1 145755 103 - 1 AAGUUUGGGA------AAAGUUUUAGCUAAGGAAAUGGGAUUAACCAGUUUCAGAAGUUUUAGUUAAGUUCCAAACAGAGUCACUUAAGUUUUCACACAU--AGACAUACA ..((((((((------.....(((((((((((...((..(((....)))..))....)))))))))))))))))))............((((........--))))..... ( -22.00) >consensus AAGUUUGGGA______AAAGUUUCGGCUUAGGAAAUGGGAUUAACCAGUUUUCUAAGUUUUAGUUAAGUUCCAAGCAGAGUCACUUAAGUUUUCACACAU_AAGAC_AACA ..((((((((..............((((((((((((((......))).))))))))))).........))))))))................................... (-15.10 = -16.98 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:24 2006