Locus 4211

Sequence ID 2R_DroMel_CAF1
Location 13,839,992 – 13,840,091
Length 99
Max. P 0.680030
window6767

overview

Window 7

Location 13,839,992 – 13,840,091
Length 99
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 86.63
Mean single sequence MFE -20.64
Consensus MFE -14.85
Energy contribution -15.13
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.72
SVM decision value 0.30
SVM RNA-class probability 0.680030
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13839992 99 + 20766785
UGGGCACCAAUUAAAAAUUUUCAACUGCAAUCCGGGCAUUAAAACAUGAUAAAAACAUUUUUGAAAGUUUCG---AAG--------UUUCAAAGUCUUGG-UAUGCCCAGC
((((((((((...............(((.......)))....................((((((((.(....---.).--------))))))))..))))-)..))))).. ( -18.50)
>DroSec_CAF1 140267 99 + 1
UGGGCACCAAUUAAAAAUCUUCAACUGCAAUCCGGGCAUUAAAACAUGAUAAAAACAUCUUUGAAAACUUCC---AAG--------UUUCAAAGUCUUGG-UAUGCCCAGC
((((((((((...............(((.......)))....................((((((((.((...---.))--------))))))))..))))-)..))))).. ( -20.50)
>DroSim_CAF1 145542 99 + 1
UGGGCACCAAUUAAAAAUCUUCAACUGCAAUCCGGGCAUUAAAACAUGAUAAAAACGUCUUUGAAAACUUCC---AAG--------UUUCAAAGUCUUGG-UAUGCCCAGC
((((((((((...............(((.......)))..................(.((((((((.((...---.))--------)))))))).)))))-)..))))).. ( -22.00)
>DroEre_CAF1 141060 102 + 1
UGGGCUCCAAUUAAAAAUCUUCAACUGCCAUCCGGGCAUUAAAACAUUAUAAGAGCAUCUUUGAAAACUACUAACAAG--------UUUCAAAGUCUUGG-CAUGCCCAGA
(((((.((((...............((((.....))))....................((((((((.((.......))--------))))))))..))))-...))))).. ( -23.10)
>DroYak_CAF1 145392 111 + 1
UGGGCUCCAAUUAAAAAUCUUCAACUGGCAUCAGGGCAUUAAAACAUUAUAAAAACUUCUUUGAAAACUCCCAAUAAGUUUUAAAGUUUCAAAGUCUUGGUCAUGCUCAGC
(((((.(((................))).((((((((.((.((((.(((...((((((..(((........))).))))))))).)))).)).))))))))...))))).. ( -19.09)
>consensus
UGGGCACCAAUUAAAAAUCUUCAACUGCAAUCCGGGCAUUAAAACAUGAUAAAAACAUCUUUGAAAACUUCC___AAG________UUUCAAAGUCUUGG_UAUGCCCAGC
((((((((((...............(((.......)))....................((((((((....................))))))))..))))...)))))).. (-14.85 = -15.13 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:23 2006