Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,834,568 – 13,834,659 |
Length | 91 |
Max. P | 0.906976 |
Location | 13,834,568 – 13,834,659 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -18.98 |
Consensus MFE | -14.56 |
Energy contribution | -14.92 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.07 |
Mean z-score | -3.46 |
Structure conservation index | 0.77 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13834568 91 + 20766785 GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUACAUACAUAUACAUGCAAUAAAUUUGCUAAAUGAA ((((((((((((........)))))).....)))))-).................................((((.....))))........ ( -18.00) >DroSec_CAF1 135031 87 + 1 GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACACAUACAU----AUACAUGCAAUAAAUUUGCUAAAUGAA ((((((((((((........)))))).....)))))-).......................----......((((.....))))........ ( -18.00) >DroSim_CAF1 140272 89 + 1 GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUACAUAC--AUACAUGCAAUAAAUUUGCUAAAUGAA ((((((((((((........)))))).....)))))-)........................(--((....((((.....))))...))).. ( -18.90) >DroEre_CAF1 135718 81 + 1 GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUA----------CAUGCAAUAAAUUUGCUAAAUGAA ((((((((((((........)))))).....)))))-)....................----------...((((.....))))........ ( -18.00) >DroWil_CAF1 162410 79 + 1 GCUGUUUCAUGCUUCAUGGCGCAUGAAAUGCAACAGUCCAGCGCAACAACAAAAUGU---UGC--AUAAAUG----AAAUCUGUUUC----A ((.(((((((((........)))))))))))(((((..((..((((((......)))---)))--.....))----....)))))..----. ( -22.10) >DroYak_CAF1 139807 85 + 1 GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUACAU------ACAUGCAAUAAAUUUGCUAAAUGAA ((((((((((((........)))))).....)))))-)....................(((------....((((.....))))...))).. ( -18.90) >consensus GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG_CAACCGAAACAACAACAUAUACAU____AUACAUGCAAUAAAUUUGCUAAAUGAA ((.(((((((((........)))))))))))........................................((((.....))))........ (-14.56 = -14.92 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:21 2006