Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,833,852 – 13,833,951 |
Length | 99 |
Max. P | 0.843061 |
Location | 13,833,852 – 13,833,951 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 93.66 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -22.97 |
Energy contribution | -22.73 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.41 |
Structure conservation index | 0.88 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13833852 99 + 20766785 GA--GGGAUUCUCGCAAUUUUCAUUUGCUGUGCUGCAAAAACGAAAAUGAAAACAAACAGCAUCUGGUGGGAAAAGCGAUUUUCAAUCGUCACUUCCCGCU ..--(((((((((((.((((((.(((((......)))))...)))))).........(((...))))))))))..(((((.....)))))....))))... ( -25.60) >DroSec_CAF1 134315 101 + 1 GGAGGAGAUUCUCGCAAUUUUCAUUUGCUGUGCUGCAAAAACGAAAAUGAAAACAAACAGCAUCUGGUGGGAAAAGCGAUUUUCAAUCGUCACUUCCCGCU ((.((((.(((((((.((((((.(((((......)))))...)))))).........(((...))))))))))..(((((.....)))))..))))))... ( -25.40) >DroSim_CAF1 139561 101 + 1 GGAGGAGAUUCUCGCAAUUUUCAUUUGCUGUGCUGCAAAAACGAAAAUGAAAACAAACAGCAUCUGGUGGGAAAAGCGAUUUUCAAUCGUCACUUCCCGCU ((.((((.(((((((.((((((.(((((......)))))...)))))).........(((...))))))))))..(((((.....)))))..))))))... ( -25.40) >DroEre_CAF1 134981 99 + 1 -GGGGGGAUUCUAGCAAUUUUCAUUUGCGU-GCUGCAAGUACGAAAAAGAAAACAAACAGCAUCUGGUGGGAAAAGCGAUUUUCAAUCGUCACUUCCCGCU -....((((.((.....(((((.(((.(((-((.....))))).))).))))).....)).))))((((((((..(((((.....)))))...)))))))) ( -27.20) >DroYak_CAF1 139085 100 + 1 -GGGGGGAUUCUCGCAAUUUUCAUUUGCUUGGCUGCAAAAACGAAAAGGAAAACAAACAGCAUCUGGUGGGAAAAGCGAUUUUCAAUCGUCACUUCCCGCU -((((((.(((((((..(((((.(((((......)))))...)))))..........(((...))))))))))..(((((.....)))))..))))))... ( -27.40) >consensus GGAGGGGAUUCUCGCAAUUUUCAUUUGCUGUGCUGCAAAAACGAAAAUGAAAACAAACAGCAUCUGGUGGGAAAAGCGAUUUUCAAUCGUCACUUCCCGCU .....((((....((((.......))))...((((......................))))))))((((((((..(((((.....)))))...)))))))) (-22.97 = -22.73 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:20 2006