Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,831,480 – 13,831,573 |
Length | 93 |
Max. P | 0.971878 |
Location | 13,831,480 – 13,831,573 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 94.49 |
Mean single sequence MFE | -8.96 |
Consensus MFE | -8.80 |
Energy contribution | -8.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.98 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13831480 93 + 20766785 -AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU------- -.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- ( -8.80) >DroSec_CAF1 132021 93 + 1 -AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU------- -.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- ( -8.80) >DroSim_CAF1 137225 93 + 1 -AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU------- -.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- ( -8.80) >DroEre_CAF1 132590 93 + 1 -AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUGUCCAU------- -.........((((..........(((((.(((..((((((((...))))))))..)))...........)))))..........)))).....------- ( -9.55) >DroYak_CAF1 136757 93 + 1 -AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCUAU------- -.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- ( -8.80) >DroAna_CAF1 140189 101 + 1 CAACCCAACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCGAGCUAGCACAU ..............(((.(((((((((((.....)))).)))))(((((((....((((............))))..))))))).....))..)))..... ( -9.00) >consensus _AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU_______ ........................(((((.(((..((((((((...))))))))..)))...........))))).......................... ( -8.80 = -8.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:19 2006