Locus 4205

Sequence ID 2R_DroMel_CAF1
Location 13,828,818 – 13,828,928
Length 110
Max. P 0.599407
window6759

overview

Window 9

Location 13,828,818 – 13,828,928
Length 110
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 93.61
Mean single sequence MFE -23.42
Consensus MFE -17.34
Energy contribution -17.90
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.52
Structure conservation index 0.74
SVM decision value 0.13
SVM RNA-class probability 0.599407
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13828818 110 + 20766785
AUUAUGUGUGUUCAUAUGUAUUUGAGCAGAAAACAAAUAAAUGGCUUUCAUUUAAUGUUCAAUUAAAAGCUUUCCAAAUGACGCACACGUAAUAAAUCAAA-AAUGCGUAG
(((((((((((((((.((.....((((.((((.((......))..)))).((((((.....)))))).))))..)).)))).)))))))))))........-......... ( -23.80)
>DroSec_CAF1 129369 108 + 1
AUUAUGUGUGUUCA--UGUUUUUGAGCAGAAAACAAAUAAAUGGCUUUCAUUUAAUGUUCAAUUAAAAGCUUUCCAAGUGACGCACACGUAAUAAAUCAAA-AAUGCGUAG
((((((((((((((--(......((((.((((.((......))..)))).((((((.....)))))).)))).....)))).)))))))))))........-......... ( -24.70)
>DroSim_CAF1 134623 108 + 1
AUUAUGUGUGUUCA--UGUAUUUGAGCAGAAAACCAAUAAAUGGCUUUCAUUUAAUGUUCAAUUAAAAGCUUUCCAAGUGACGCACACGUAAUAAAUCAAA-AAUGCGUAU
((((((((((((((--(......((((.((((.(((.....))).)))).((((((.....)))))).)))).....)))).)))))))))))........-......... ( -28.10)
>DroYak_CAF1 134136 107 + 1
AUUAUGU--GUUCA--UGUAUUUGAGCAGAAAACAAAUAAAUGGCAUUCAUUUAAUGUUCAAUUAAAAGCUAUCCAAGUGACGCACACAUAAUAAAUCAAAAAAUAUGUAG
(((((((--((.(.--..(((((((((.(((..((......))...))).((((((.....)))))).)))...))))))..).))))))))).................. ( -17.10)
>consensus
AUUAUGUGUGUUCA__UGUAUUUGAGCAGAAAACAAAUAAAUGGCUUUCAUUUAAUGUUCAAUUAAAAGCUUUCCAAGUGACGCACACGUAAUAAAUCAAA_AAUGCGUAG
(((((((((((((........(((((((.........((((((.....)))))).)))))))......(((.....))))).))))))))))).................. (-17.34 = -17.90 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:16 2006