Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,819,399 – 13,819,496 |
Length | 97 |
Max. P | 0.637862 |
Location | 13,819,399 – 13,819,496 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 80.13 |
Mean single sequence MFE | -11.10 |
Consensus MFE | -6.96 |
Energy contribution | -7.76 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.63 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13819399 97 - 20766785 AUUUUGAUUAAUCCCAUA--UAUAGUUGA---UUAAAACUAUUGAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU-UCCCUCAACC ..(((((((......(((--((((((..(---(.......))..)...)))))))).....((.((((........)))).)))))))))..-.......... ( -11.30) >DroSec_CAF1 119835 91 - 1 A------UUAAUCUCAUA--UAUAGUUGA---UUAAAACUAUAAAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU-UCCCUCAACC .------...........--(((((((..---....)))))))...............(((((.((((........)))).)))))......-.......... ( -10.50) >DroSim_CAF1 125235 91 - 1 A------UUUAUCUCAUA--UAUAGUUGA---AUAAAACUAUAAAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU-UCCCUCAACC .------...........--(((((((..---....)))))))...............(((((.((((........)))).)))))......-.......... ( -10.50) >DroEre_CAF1 120285 91 - 1 A------UGU--AUCUUGAUUACUGUUGA---UAAAAACUAUAUGGAACUAUAUAUUUAUUUGCUGUGUACGAAAUCACACCAAGUCAAGCU-UCCCUCUUCC .------...--..(((((((...((.((---((((...((((((....)))))))))))).))((((........))))...)))))))..-.......... ( -12.90) >DroYak_CAF1 124508 89 - 1 ------------AUCUUA--UACAGUUGAAAACAAAAACUAUAUAAAACUAUACAUAUAUUUGCUGUGUAUCAAAUCACACCAAGUCAAGUUUUCCCUCUUCC ------------......--.......((((((........((((....)))).....(((((.((((........)))).)))))...))))))........ ( -10.30) >consensus A______UUAAUCUCAUA__UAUAGUUGA___UUAAAACUAUAAAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU_UCCCUCAACC ....................(((((((.........)))))))...............(((((.((((........)))).)))))................. ( -6.96 = -7.76 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:15 2006