Locus 4203

Sequence ID 2R_DroMel_CAF1
Location 13,815,337 – 13,815,444
Length 107
Max. P 0.539006
window6757

overview

Window 7

Location 13,815,337 – 13,815,444
Length 107
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 78.93
Mean single sequence MFE -21.29
Consensus MFE -10.35
Energy contribution -10.72
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -2.03
Structure conservation index 0.49
SVM decision value 0.01
SVM RNA-class probability 0.539006
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13815337 107 + 20766785
GACAUUCUU----AAAGCAAAGAAAGUCUCUCAUUUUU-UUUCCUG---UUUACUUUCCCCUCAUUU-CGCU---CCCCCCUUGAAAAUGCAAUUCGUGUUGCAUUUCAAGUGAAAACU
(((.(((((----......))))).)))..........-.......---...............(((-((((---.......(((((.((((((....))))))))))))))))))... ( -20.01)
>DroSec_CAF1 115860 108 + 1
CCCAUUCUU----AAAGCAAAGAAAGUCUCUCCAUUUU-UUUCCUG---UUUACUUUCCCCUCUUUUCCGCC---ACCCCGUGGAAAAUGCAAUUCUAGUUGCAUUUCAAGUGAAAACU
....(((((----......)))))..............-.......---(((((((..........(((((.---.....)))))(((((((((....))))))))).))))))).... ( -19.50)
>DroSim_CAF1 121297 109 + 1
GACAUUCUU----AAAGCAAAGAAAGUCUCUCCAUUUUUUUUCCUG---UUUACUUUCCCCUCGUUUCCGCA---ACCCCCUGGAAAAUGCAAUUCGAGUUGCAUUUCAAGUGAAAACU
(((.(((((----......))))).)))..................---(((((((..........((((..---......))))(((((((((....))))))))).))))))).... ( -20.20)
>DroEre_CAF1 116209 103 + 1
GACAUUCUU----AAAGCAAGGAAAGUGUCUUCAUUUU--UUUCCG---UAUACUUUCCCCUCGUUUC-G------ACCCCUUGAAAAUGCAAUUCGAGUUGCAUUUCAAGUGAAAACU
....((((.----.((((..((((((((((........--.....)---.)))))))))....)))).-.------)...(((((((.((((((....))))))))))))).))).... ( -21.92)
>DroYak_CAF1 120468 104 + 1
GAAAUGCUU----AAAGCAAAGAAAGUCUCUCCAUUUU-UUUUCUG---UACACUUUCCCCUCGUUUC-G------ACCCCUUGCAAAUGCAAUUCGAGUUGCAUUUCAAGUGAAAACU
(((((((..----..((.(((((((((......)))))-)))))).---................(((-(------(....((((....)))).)))))..))))))).(((....))) ( -19.90)
>DroAna_CAF1 122384 115 + 1
AACUUUAGUGACGAAAGCAUA----GCCUGAAUAUUUCUCUUUGUGUAGCUUGGUUGCCACUUUUUUCCUCUUGCCCCUCCUUGGAAAUGCAAUUCGAGUUGCAUUUCAAGUGAAAACU
.......(((.(....)))).----.........((((.(((.(((((((((((((((......(((((..............))))).)))).)))))))))))...))).))))... ( -26.24)
>consensus
GACAUUCUU____AAAGCAAAGAAAGUCUCUCCAUUUU_UUUCCUG___UUUACUUUCCCCUCGUUUCCGC_____CCCCCUUGAAAAUGCAAUUCGAGUUGCAUUUCAAGUGAAAACU
..............................................................................(.((((.(((((((((....))))))))))))).)...... (-10.35 = -10.72 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:14 2006