Locus 4202

Sequence ID 2R_DroMel_CAF1
Location 13,813,543 – 13,813,662
Length 119
Max. P 0.634464
window6756

overview

Window 6

Location 13,813,543 – 13,813,662
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.47
Mean single sequence MFE -46.18
Consensus MFE -32.13
Energy contribution -34.33
Covariance contribution 2.20
Combinations/Pair 1.19
Mean z-score -2.10
Structure conservation index 0.70
SVM decision value 0.21
SVM RNA-class probability 0.634464
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13813543 119 + 20766785
UGCUCCAAUAUGGUGCAGUUCGAUGGCGAUUUUGUGCCACCAUGGCCACGAAAUGUUUACAAGUUGGACAAAUGUGUGGCCAGUGGCGAGGGACUGCCAGAUAUUGCACCAGAGGGUUU
....((....(((((((((....(((((.(((..((((((..((((((((...((((((.....))))))....))))))))))))))..))).)))))...)))))))))...))... ( -53.10)
>DroPse_CAF1 111346 119 + 1
UGCUCCAAUUUGGUCCAGUCCGAGGGCGACUACGUCCCGCCCUGGCCCAGGAACGUCUACAGGCUCGACAAGUGCGUGGUCAACGGCGAUGGGCUGCCAGAAAUAGUCCCCGAGGGGUU
.(((((...((((......))))(((.(((((..((..((...((((((....(((...((.((.(.....).)).))....)))....))))))))..))..))))))))..))))). ( -43.60)
>DroSec_CAF1 114054 119 + 1
UGCUCCAAUAUGGUGCAGUUCGAGGGCGAUUUUGUGCCACCAUGGCCACGAAAUGUUUACAAGUUGGACAAAUGUGUGGCCAGUGGCGAGGGACUGCCGGAUAUCGCACCAGAGGGUUU
....((....((((((.((((...((((.(((..((((((..((((((((...((((((.....))))))....))))))))))))))..))).))))))))...))))))...))... ( -46.80)
>DroSim_CAF1 119499 119 + 1
UGCUCCAAUAUGGUGCAGUUCGAGGGCGAUUUUGUGCCUCCAUGGCCACGAAAUGUUUACAAGUUGGACAAAUGUGUGGCCAGUGGCGAGGGAUUGCCGGAUAUCGCACCAGAGGGUUU
....((....((((((.((((...((((((((..((((....((((((((...((((((.....))))))....))))))))..))))..))))))))))))...))))))...))... ( -48.00)
>DroEre_CAF1 114378 119 + 1
UGUUCCAAUAUGCUGCAAUUCGAAGGCGAUUUUGUGCCUCCAUGGCCACGAAAUGUUUACAAAUUGGACAAAUGUGUGGCCAGUGGCGAGGGACUGCCAGAAAUCGCACCGGAAGGCUU
..............((..((((...((((((((((.(((((.((((((((...((((((.....))))))....))))))))...).)))).)).....))))))))..))))..)).. ( -41.30)
>DroPer_CAF1 112551 119 + 1
UGCUCCAAUUUGGUCCAGUCCGAGGGCGACUACGUCCCGCCCUGGCCCAGGAACGUCUACAGGCUCGACAAGUGCGUGGCCAACGGCGAUGGGCUGCCAGAAAUAGUACCCGAGGGGUU
.(((((..(((((.((((..((.(((((....)))))))..)))).)))))..((((....((((((.(....))).))))...)))).((((.(((.(....).))))))).))))). ( -44.30)
>consensus
UGCUCCAAUAUGGUGCAGUUCGAGGGCGAUUUUGUGCCACCAUGGCCACGAAAUGUUUACAAGUUGGACAAAUGUGUGGCCAGUGGCGAGGGACUGCCAGAAAUCGCACCAGAGGGUUU
....((....((((((.((.....((((.(((..((((((..((((((((...((((((.....))))))....))))))))))))))..))).))))....)).))))))...))... (-32.13 = -34.33 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:13 2006