| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,811,907 – 13,812,006 |
| Length | 99 |
| Max. P | 0.669753 |
| Location | 13,811,907 – 13,812,006 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.14 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -14.32 |
| Energy contribution | -14.68 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13811907 99 - 20766785 CCUACCG---------CCGUUUGGCAUUCACCUACGAGCAGGAGUGCCAUACAAAGUUCAGCAAUAAAACACCGGACAGACAUAAUUACAAUAUGAAACUAAGUAUUG ....(((---------..((.((((((((..(.....)...)))))))).))...(((.........)))..))).............((((((........)))))) ( -17.60) >DroSec_CAF1 112439 99 - 1 CCUACCG---------CCGUUUGGCACUCACUCACAAGCAGGAGUGCCAUACAAAGUUCAGCAAUGAAACACCGGACAGACAUAAUUACAAUAUGAAAAUAAGUAAUG ....(((---------..((.((((((((.(((....).)))))))))).))....((((....))))....))).........(((((..(((....))).))))). ( -25.20) >DroSim_CAF1 116303 99 - 1 CCUACCG---------CCGUUUGGCACUCACUCACAAGCAGGAGUGCCAGACAAAGUUCAGCAAUGAAACACCGGACAGACAUAAUUACAAUAUGAAACUAAGUAAUG ....(((---------..(((((((((((.(((....).)))))))))))))....((((....))))....))).........(((((.............))))). ( -26.82) >DroEre_CAF1 112813 108 - 1 CCUACCGUUUUAACCGAUGUUUGACACUCGCUUAUAAGCAAGAGUGCUAUACAAAUUUCAACAAUGAAACACAGGAAAGACAUCAUCAGAAUAUGAAUCUGAGCAAUG ...............(((((((..((((((((....)))..))))).........(((((....)))))........))))))).(((((.......)))))...... ( -20.00) >DroYak_CAF1 117055 98 - 1 CGUACCU---------CCGUUCGGCACUCACUUAUAAGCAGGAGUGUCAUACAAAUUUCAGCAAUGAAACACCGAAAAGACAUAAU-AGAAUAUGAAACUGAGCAAUG .......---------..(((((((((((.((.......))))))))).......(((((....)))))...........((((..-....)))).....)))).... ( -19.40) >consensus CCUACCG_________CCGUUUGGCACUCACUUACAAGCAGGAGUGCCAUACAAAGUUCAGCAAUGAAACACCGGACAGACAUAAUUACAAUAUGAAACUAAGUAAUG ....((............((.((((((((............)))))))).))....((((....)))).....))................................. (-14.32 = -14.68 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:12 2006