Locus 4200

Sequence ID 2R_DroMel_CAF1
Location 13,809,341 – 13,809,454
Length 113
Max. P 0.861326
window6754

overview

Window 4

Location 13,809,341 – 13,809,454
Length 113
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 86.14
Mean single sequence MFE -35.17
Consensus MFE -29.23
Energy contribution -30.18
Covariance contribution 0.95
Combinations/Pair 1.29
Mean z-score -2.33
Structure conservation index 0.83
SVM decision value 0.83
SVM RNA-class probability 0.861326
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13809341 113 + 20766785
ACAGUGAUGGUUUUCCGGAUAUGGUUCCCGAGGGCUACUACAAGGUCAAUUUCACCUUGACGAAUCCCGUGGAUUGGGGAUUCAUUCUGAUUGUGAAGAUAACCACAAAACUU
.(((...((((((((.(((......))).))))))))...((((((.......))))))..(((((((........)))))))...))).(((((........)))))..... ( -34.00)
>DroSec_CAF1 110012 113 + 1
ACAGUGAUGGCUUUCCGGAUAUGGUUCCCGAGGGCUACUACAAAGUCAAUUUCACCAUUAUGAAUCCCGUGGAUUGGGGAUUCAUUCUCAUUGUAAAGAUAACCACCAAACUU
(((((((((((((((.(((......))).))))))))......................(((((((((........)))))))))..)))))))................... ( -32.40)
>DroSim_CAF1 113823 113 + 1
ACAGUGAUGGCUUUCCGGAUAUGGUUCCCGAGGGCUACUACAAGGUCAAUUUCACCAUGAUGAAUCCCGUGGAUUGGGGAUUCAUUCUCAUUGUGAAGAUAACCACCAAACUU
...(((.((((((((.(((......))).)))))))).)))..(((.(.((((((.((((((((((((........))))))))...)))).)))))).).)))......... ( -40.50)
>DroEre_CAF1 110367 113 + 1
ACAGUGAUGGCUUUCCGGACAUUGUUCCUGAGGGGUACUACAAGGUCAAUUUCACCAUGAUGAAUCCCGUGGAUUGGGGAUUCAUUCUCAUUGUGAAGAUAUCCACCAAACUU
...(((.((.(((((.(((......))).))))).)).)))..((....((((((.((((((((((((........))))))))...)))).))))))....))......... ( -34.00)
>DroYak_CAF1 114651 113 + 1
AUAGUGAUGGCUUUCCGGACAUUAUUCCCGAGGGCUACUACAAGGUGAAUUUUACCAUGAUGAAUCCCGUGGACUGGGGAUUCAUUCUCAUUGUGAAGAUAACCACAAAGCUU
...(((.((((((((.(((......))).)))))))).)))..(((...((((((.((((((((((((........))))))))...)))).))))))...)))......... ( -38.50)
>DroAna_CAF1 117813 113 + 1
ACAGUGAUGGCUUCCCGGAAGUCGUUCCCGAAGGUUACUACAGGAUCAUUAUGAACUUUACGGGUCCCGUGGACUGGGGCUUCGUCCUAGUGGUGAAGAUAUUCAAUAAAAUG
...(..((((((((...))))))))..).(((..(((((((((((((.....))......(((((((((.....)))))).))))))).))))))).....)))......... ( -31.60)
>consensus
ACAGUGAUGGCUUUCCGGAUAUGGUUCCCGAGGGCUACUACAAGGUCAAUUUCACCAUGAUGAAUCCCGUGGAUUGGGGAUUCAUUCUCAUUGUGAAGAUAACCACCAAACUU
...(((.((((((((.(((......))).)))))))).)))..(((...((((((.((((((((((((........))))))))...)))).))))))...)))......... (-29.23 = -30.18 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006