Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,258,950 – 1,259,083 |
Length | 133 |
Max. P | 0.999533 |
Location | 1,258,950 – 1,259,043 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 96.82 |
Mean single sequence MFE | -36.02 |
Consensus MFE | -32.02 |
Energy contribution | -31.98 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.99 |
Structure conservation index | 0.89 |
SVM decision value | 3.69 |
SVM RNA-class probability | 0.999533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1258950 93 - 20766785 GCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGUUGAUCGCAGGGCGUUGAAAGCGCUGGAUAAGCCGCAGGAA ((((((((((((((((........)))))))))).....(..(---(..((((((.....))))))((.......))))..)...))))))..... ( -37.20) >DroSec_CAF1 10503 93 - 1 GCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGUUGAUCGCAGGGCGUUGAAAGCGCUGGAUAAGCCGCAGGAA ((((((((((((((((........)))))))))).....(..(---(..((((((.....))))))((.......))))..)...))))))..... ( -37.20) >DroSim_CAF1 16415 93 - 1 GCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGUUGAUCGCAGGGCGUUGAAAGCGCUGGAUAAGCCGCAGGAA ((((((((((((((((........)))))))))).....(..(---(..((((((.....))))))((.......))))..)...))))))..... ( -37.20) >DroEre_CAF1 15183 93 - 1 GCGGUUUUUGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGUUGAACGCAGGGCGUUGAAAGCGCUGGAUAAGCCGCAGGAA ((((((((((((((((........)))))))))).....(..(---(..((((((.....))))))((.......))))..)...))))))..... ( -35.60) >DroYak_CAF1 13632 96 - 1 GCGGUUUUUGUUCGUAAACCAGAAUAUGAACGGAUUAAACUGGCGGCUGCCUCCGUUGAUCGCAGGGCGUUGAAAGCGCUGGAUAAGCCGCAGGAA .(((((((((((((((........))))))))))...)))))((((((.((..((((...(((...))).....))))..))...))))))..... ( -32.90) >consensus GCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG___CUGCCUGCGUUGAUCGCAGGGCGUUGAAAGCGCUGGAUAAGCCGCAGGAA ((((((((((((((((........))))))))))...............((((((.....))))))((((.....))))......))))))..... (-32.02 = -31.98 + -0.04)
Location | 1,258,990 – 1,259,083 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 93.62 |
Mean single sequence MFE | -29.56 |
Consensus MFE | -25.74 |
Energy contribution | -25.22 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.18 |
Structure conservation index | 0.87 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1258990 93 - 20766785 AAAGGGGGCGUAGACCAUGAGUGAUGCUGCUGUGGCAGUUGCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGU ...((.(((((..((.....)).))))).))((((((((..(((((((((((((((........)))))))))...)))))))---))))).)).. ( -31.00) >DroSec_CAF1 10543 93 - 1 AAAGAGGGCGUGGACCAUGAGUGAUGCUGCUGUGGCAGUUGCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGU ......(((((.(........).)))))((...((((((..(((((((((((((((........)))))))))...)))))))---))))).)).. ( -29.80) >DroSim_CAF1 16455 93 - 1 AAAGAGGGCGUGGACCAUGAGUGAUGCUGCUGUGGCAGUUGCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGU ......(((((.(........).)))))((...((((((..(((((((((((((((........)))))))))...)))))))---))))).)).. ( -29.80) >DroEre_CAF1 15223 91 - 1 AG--AGGGCGUGGACCAUGAGUGAUGCUGCUGUGGCAGUUGCGGUUUUUGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG---CUGCCUGCGU ..--..(((((.(........).)))))((...((((((..(((((((((((((((........)))))))))...)))))))---))))).)).. ( -27.80) >DroYak_CAF1 13672 94 - 1 AG--AGAGUGUGGACCAUGAGUGAUGCUGCUGUGGCAGUUGCGGUUUUUGUUCGUAAACCAGAAUAUGAACGGAUUAAACUGGCGGCUGCCUCCGU ..--.......(((.....(((......)))..(((((((((((((((((((((((........))))))))))...)))).)))))))))))).. ( -29.40) >consensus AAAGAGGGCGUGGACCAUGAGUGAUGCUGCUGUGGCAGUUGCGGUUUUCGUUCGUAAACCAGAAUAUGAACGGAUUGAACUGG___CUGCCUGCGU ......(((((.(........).)))))((...(((((...(((((((((((((((........)))))))))...))))))....))))).)).. (-25.74 = -25.22 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:29 2006