Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,806,016 – 13,806,119 |
Length | 103 |
Max. P | 0.963822 |
Location | 13,806,016 – 13,806,119 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -24.38 |
Energy contribution | -25.22 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -2.14 |
Structure conservation index | 0.80 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13806016 103 - 20766785 UCCGAGUGAAGGGGGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGUCUGGGCUUAAAAACCUCGCAUUUGGAUG-----AGAUUAAAU ((((((((..((((.((((.((((((.(-(.....)).))))))))))........(((((((......)))))))....)))).))))))))..-----......... ( -32.60) >DroSec_CAF1 106726 102 - 1 UCCGAGUGAAGGGGGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGCCUGGGCUUAAAAA-CUCGCAUUCGGAUG-----AGAUUAAAU ((((((((..(((..((((.((((((.(-(.....)).))))))))))..).....(((((((......)))))))....-))..))))))))..-----......... ( -33.10) >DroSim_CAF1 110541 102 - 1 UCCGAGUGAAGGGGGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGUCUGGGCUUAAAAA-CUCGCAUUUGGAUG-----AGAUUAAAU ((((((((..(((..((((.((((((.(-(.....)).))))))))))..).....(((((((......)))))))....-))..))))))))..-----......... ( -31.00) >DroEre_CAF1 107070 101 - 1 UCCGAGUGAAGG-GGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGGAAAGCGCUCUUGUCCGGGCUCAAAAA-CUCGCAUUUGGAUG-----AGAUUAAAU ((((((((...(-(((((.(((((((.(-(.....)).))))))).(((...(((......)))..))))))))).....-....))))))))..-----......... ( -29.60) >DroYak_CAF1 111301 97 - 1 UCCGAGUGAAGG-GGCUCAGUGGCGAAUGAAAAGAUGAUUGCCAUGGGAAC----------UCUUGUCUGGGCUUAAAAA-CUCGCAUUUGGAUGAGAUGAGAUUAAAU ..(((((....(-(((((((.(((((............)))))(..((...----------.))..)))))))))....)-))))(((((.....)))))......... ( -25.40) >consensus UCCGAGUGAAGGGGGCUCAGUGGCGAAU_AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGUCUGGGCUUAAAAA_CUCGCAUUUGGAUG_____AGAUUAAAU ((((((((..((((((((((((((((............)))))).(((..(......)..)))....))))))))......))..))))))))................ (-24.38 = -25.22 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:08 2006