Locus 4197

Sequence ID 2R_DroMel_CAF1
Location 13,805,654 – 13,805,747
Length 93
Max. P 0.985140
window6750

overview

Window 0

Location 13,805,654 – 13,805,747
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 79.36
Mean single sequence MFE -22.45
Consensus MFE -10.26
Energy contribution -10.45
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -3.73
Structure conservation index 0.46
SVM decision value 2.00
SVM RNA-class probability 0.985140
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13805654 93 + 20766785
CUUAGUCGACAGUUUUUGUGCC------CACAUUGUCAAUUAAUUUGAUUGAUUGGUU-UGCAUGAAUCUCUGUUGAUUCAUUCAAUUU-UUCUCCGCUUC
...(((((((((..((..(((.------.((...(((((((.....)))))))..)).-.)))..))...)))))))))..........-........... ( -23.60)
>DroSec_CAF1 106361 94 + 1
CUUAGUCGACAGUUUUUGUGCC------CACUUUGUCAAUUAAUUUGAUUGAUUGGUU-UGCAUGAAUCUCUGUUGAUUCAUUCAAUUUUUUCUCCGCUUC
...(((((((((..((..(((.------.(((..(((((((.....))))))).))).-.)))..))...)))))))))...................... ( -24.20)
>DroSim_CAF1 110176 94 + 1
CUUAGUCGACAGUUUUUGUGCC------CACUUUGUCAAUUAAUUUGAUUGAUUGGUU-UGCAUGAAUCUCUGUUGAUUCAUUCAAUUUUUUCUCCGCUUC
...(((((((((..((..(((.------.(((..(((((((.....))))))).))).-.)))..))...)))))))))...................... ( -24.20)
>DroEre_CAF1 106678 99 + 1
CUUAGUCGACAGUUUUUGUGCCCACUGCCACUUCGUCAAUUAAAUUGAUUGAUUGGUU-UGCAUGAAUCUCUGUUGAUUCAUUCAAUUU-UUCUCCGCUUC
...(((((((((..((..(((.....((((.((.((((((...)))))).)).)))).-.)))..))...)))))))))..........-........... ( -24.40)
>DroYak_CAF1 110926 88 + 1
-----------GUUUUUUGGCCCACUGCCAAUUCGUCAAUUAGUUUGAUUGAUUGGUU-UGCAUGAAUCUCUGUUGGUUCAUUCAAUUU-UUCUGCGCUUU
-----------.......(((.((..(((((((.(((((.....))))).)))))))(-((.(((((((......))))))).)))...-...)).))).. ( -22.20)
>DroAna_CAF1 114584 76 + 1
AUUAGUUGACAGUUUU--------------CUGUGUCAUUUAA-UUGAUUGAUUGGUUUUGAAUAAAUCCCAGUUGAUU-AUUCAUUUU-UUG--------
(((((.(((((.....--------------...))))).))))-)((((..(((((..((.....))..)))))..)))-)........-...-------- ( -16.10)
>consensus
CUUAGUCGACAGUUUUUGUGCC______CACUUUGUCAAUUAAUUUGAUUGAUUGGUU_UGCAUGAAUCUCUGUUGAUUCAUUCAAUUU_UUCUCCGCUUC
..................................(((((((.....)))))))......((.(((((((......))))))).))................ (-10.26 = -10.45 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:07 2006