Locus 4195

Sequence ID 2R_DroMel_CAF1
Location 13,800,707 – 13,800,803
Length 96
Max. P 0.602733
window6747

overview

Window 7

Location 13,800,707 – 13,800,803
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.43
Mean single sequence MFE -41.13
Consensus MFE -17.59
Energy contribution -17.62
Covariance contribution 0.03
Combinations/Pair 1.36
Mean z-score -2.16
Structure conservation index 0.43
SVM decision value 0.14
SVM RNA-class probability 0.602733
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13800707 96 - 20766785
CCUUCAGCGGGCUCUCCUUCCACCGGUUCACCAUCGACCGUGGUGCCUGCCGCUGCCUCACUUCUGGCAGCGACCGGAGCAGCCUCCUCCUCCGCC
......((((((.......((((.((((.......)))))))).))))))(((((((........)))))))..(((((.((....)).))))).. ( -39.40)
>DroPse_CAF1 98602 96 - 1
CCGUCGGCCGGCUCACCCUCGGCGGGAUCUCCAUCGGCCGUCGUCCCAGCAGCCGCCUCUCUGCUGGCAGCCACAACGGCCGUCUCCUCCUCCGCC
..(((....)))........((((((........(((((((.((.(((((((........))))))).....)).)))))))........)))))) ( -36.49)
>DroEre_CAF1 101880 96 - 1
CCUUCAGCGGGCUCUCCAUCCGCCGGCUCACCGUCGACCGUGGUGCCUGCGGCUGCCUCACUUCUGGCGGCGACCGGAGCAGCCCCCUCCUCCGCC
.....((.(((((((((...(((.(((((((.(....).)))).))).)))((((((........))))))....)))).))))).))........ ( -42.80)
>DroYak_CAF1 106060 96 - 1
CCUUCAGCGGGCUCUCCUUCCGCCGGUUCACCUUCGAACGUGGUGCCUGCGGCUGCCUCACUUCUGGCGGCGACCGGAGCAGCCUCCUCCUCCGCC
.....((.(((((((((...(((.((..((((.........)))))).)))((((((........))))))....)))).))))).))........ ( -37.50)
>DroAna_CAF1 110036 96 - 1
CCGUCGGCUGGAUCCCCAUCCGGUGGGUCGCCAUCGGCUGUUGUGCCAGCGGCAGCUUCUUUGCUGGCGGCCGCCGGAGGGGCCUCCUCUGGAGGC
((..(((..(((.((((.((((((((.((((((.((((((((((....))))))))).....).))))))))))))))))))..))).)))..)). ( -54.10)
>DroPer_CAF1 99612 96 - 1
CCGUCGGCCGGCUCACCCUCGGCGGGAUCUCCAUCGGCCGUCGUCCCAGCAGCCGCCUCUCUGCUGGCAGCCACAACGGCCGUCUCCUCCUCCGCC
..(((....)))........((((((........(((((((.((.(((((((........))))))).....)).)))))))........)))))) ( -36.49)
>consensus
CCGUCAGCGGGCUCUCCAUCCGCCGGAUCACCAUCGACCGUGGUGCCAGCGGCUGCCUCACUGCUGGCAGCCACCGGAGCAGCCUCCUCCUCCGCC
......(((((........((((.((.((......))))))))..))))).((.(((........))).))....((((.......))))...... (-17.59 = -17.62 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:04 2006