Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,791,409 – 13,791,502 |
Length | 93 |
Max. P | 0.526165 |
Location | 13,791,409 – 13,791,502 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -34.13 |
Consensus MFE | -21.91 |
Energy contribution | -24.38 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.29 |
Mean z-score | -1.25 |
Structure conservation index | 0.64 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526165 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13791409 93 + 20766785 GAGGAAGCCGGUUGCUCAACAAUGGUUUCUGGCUUCCUCA---------AGGGCUCCACUACUUUCCUUUCAGACCCCGAGGA---GGUGGAAGUGCGCCGGGUC (((((((((((..((.((....))))..))))))))))).---------.((((((((((....(((((.........)))))---))))))...)).))..... ( -38.30) >DroSec_CAF1 92239 93 + 1 GAGGAAGCCGGUUCCUCUACAAUGGUUUCUGGCUUCCUCA---------AGGACUCCACUAUUUUCCUUUCAGACCCAGAGGA---GGUGGAAGUGCGCCGGGUC (((((((((((..((........))...))))))))))).---------.(.((((((((....((((((.......))))))---))))).))).)........ ( -38.70) >DroSim_CAF1 96099 93 + 1 AAGGAAGCCGGUUCCUCGACAAUGGUUUCUGGCUUCCUCA---------AGGACUCCACUACUUUCCUUUCAGACCCAGAGGA---GGUGGAAGUGCGCCGGGUC .((((((((((..((........))...))))))))))..---------.(.((((((((....((((((.......))))))---))))).))).)........ ( -34.50) >DroEre_CAF1 92648 96 + 1 GACGAAGCCGGUUCCUCGACAAUGGUUUGUGGCUUUCUCG---------AGGUCUCUACUACCUUUCUCUCAGGCCCAGAGGAAGUGGUGGAAGUGCGCCGGGUC .......(((((.((((((....(((.....)))...)))---------)))..((((((((.(((((((.......))))))))))))))).....)))))... ( -34.00) >DroYak_CAF1 96917 96 + 1 GACGAAGCCGGUUCCUCGACAAUCGUUUGUGGCUUUCUCA---------AGGGCUCCACUACUUUUCUUUCAGGCGCCGAUGAAGUGGUGGAAGUGCGCCGGGUC ((.(((((((....)...((((....)))))))))).)).---------.(((((((((((((((....((.(....))).)))))))))))...)).))..... ( -29.60) >DroAna_CAF1 101095 99 + 1 GAGGUCACAGGCUCCUCGACAAUGGUUUCUGGCUUCUUAACCACACGCUGUGGCUCC----C--UUUUCUCGGAUCCGGUAGAUGUAGUAGAACUGCGGCGUGUC (((((..((((..((........))..)))))))))......((((((((..(.((.----(--(..(((((....))..)))...))..)).)..)))))))). ( -29.70) >consensus GAGGAAGCCGGUUCCUCGACAAUGGUUUCUGGCUUCCUCA_________AGGGCUCCACUACUUUCCUUUCAGACCCAGAGGA___GGUGGAAGUGCGCCGGGUC (((((((((((..((........))...)))))))))))...........(.((((((((....((((((.......))))))...))))).))).)........ (-21.91 = -24.38 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:51 2006