| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,769,976 – 13,770,078 |
| Length | 102 |
| Max. P | 0.505911 |
| Location | 13,769,976 – 13,770,078 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.37 |
| Mean single sequence MFE | -35.87 |
| Consensus MFE | -16.82 |
| Energy contribution | -18.73 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.47 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13769976 102 + 20766785 AGGACAUUAUGGAAAUGAUGUCCUCGGGCACUUGACGGCCAUUACUCAGCGCGGCGAUGCUGCUG-----------AAGUAACCCUCUCU----CUGCCCCGCCA--UCUGUCUCUGCA- ((((((((((....)))))))))).(((((...((.((...((((((((((((....))).))))-----------.))))))).))...----.))))).....--............- ( -36.30) >DroSec_CAF1 70928 105 + 1 AGGACAUUAUGGAAAUGAUGUCCUCGGGCACUUGACGGCCAUUACUCAGCGCGGCGAUGCUGCUG-----------AAGUAACCCUCUCU--CCCUGCCCCGCCA--UCUGCCGCUGCCC ((((((((((....)))))))))).(((((...(.((((..((((((((((((....))).))))-----------.)))))........--....((...))..--...)))))))))) ( -37.30) >DroSim_CAF1 74773 101 + 1 AGGACAUUAUGGAAAUGAUGUCCUCGGGCACUUGACGGCCAUUACUCAGCGCGGCGAUGCUGCUG-----------AAGUAACCCUCUCU--CUCUGCCCCGCCA--UCUGCCGCU---- ((((((((((....)))))))))).(((((...((.((...((((((((((((....))).))))-----------.)))))....)).)--)..))))).((..--......)).---- ( -35.40) >DroYak_CAF1 74421 106 + 1 AGGACAUUAUGGAAAUGAUGUCCUCGGGCACUUGACGGCCAUUACUCAGU-CGACGAUGCUGCUG-----------AAGUAACCCUCUCUGCCUCUGCCACCGCC--UCUGCCUCUGCCU ((((((((((....)))))))))).(((((...((.(((..(((((((((-.(......).))))-----------.)))))........((....))....)))--)))))))...... ( -30.80) >DroAna_CAF1 77842 112 + 1 AGGACAUUAUGGAAAUGAUGUCCGCGGGCGGUUGACGGCCAUUACUCAG-------AUUCUGCUGCCACUGCCACAGAGCAAGGCUCUCG-ACUCAGCCACACAGUCUCUGCCUCGGCUG .(((((((((....)))))))))...(((((((((.((((......(((-------......)))....(((......))).)))).)))-)))..)))...(((((........))))) ( -39.20) >DroPer_CAF1 67653 94 + 1 AGGACAUUAUGGAAAUGAUGUCCGCGGGCAUUUGACUGCCAUUACUCAGG-C---GCUGCCGCUG-----------U---------UCCUGCCACAGUCACCGGC--GCAGCUUUAGUCG .(((((((((....)))))))))..........(((((((........))-)---(((((.((((-----------(---------..(((...)))..).))))--)))))...)))). ( -36.20) >consensus AGGACAUUAUGGAAAUGAUGUCCUCGGGCACUUGACGGCCAUUACUCAGC_CGGCGAUGCUGCUG___________AAGUAACCCUCUCU__CUCUGCCACGCCA__UCUGCCUCUGCC_ .(((((((((....)))))))))...(((........)))......((((........)))).......................................................... (-16.82 = -18.73 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:45 2006