Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,455,212 – 2,455,311 |
Length | 99 |
Max. P | 0.901353 |
Location | 2,455,212 – 2,455,311 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -21.93 |
Consensus MFE | -13.81 |
Energy contribution | -14.03 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -2.33 |
Structure conservation index | 0.63 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2455212 99 + 20766785 ------------------CCUUUGCACACAACCAUAUGAAUAAUCUGCAUCCCAUAUGAGAACUAUUCCCAUAUGCUAUUAUAUUCCACCGUAUUUGGUUGUCAAAUUGCUUGAACU ------------------.....(((.(((((((((((..............((((((.((.....)).))))))..............))))..))))))).....)))....... ( -15.29) >DroSec_CAF1 17281 111 + 1 CAAACUGGGAUUACUCCACACUUGCACACAAGCAUAUGAAUAGUCUGCAUCCCAUAUGGGAACUC------CAUGCUAUUAUAUUCCACCAUAUUUGGUUGUCAAAUUGCUUGAACU .......(((....)))...........((((((..((((((((.((..((((....))))....------)).)))))........((((....))))..)))...)))))).... ( -23.50) >DroSim_CAF1 17351 106 + 1 ----UUGGGAUUACUCCACACUUGCACACAAGCAUAU-AAUAGUCUGCAUCCCAUAUGGGAACUC------CAUGCUAUUAUAUUCCACCAUAUUUGGUUGUCAAAUUGCUUGAACU ----.(((((....))).))........(((((((((-((((((.((..((((....))))....------)).)))))))))....((((....))))........)))))).... ( -27.00) >consensus _____UGGGAUUACUCCACACUUGCACACAAGCAUAUGAAUAGUCUGCAUCCCAUAUGGGAACUC______CAUGCUAUUAUAUUCCACCAUAUUUGGUUGUCAAAUUGCUUGAACU ............................((((((.....(((((..(((((((....))))............))).))))).....((((....))))........)))))).... (-13.81 = -14.03 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006