Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,745,419 – 13,745,522 |
Length | 103 |
Max. P | 0.942051 |
Location | 13,745,419 – 13,745,522 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 92.66 |
Mean single sequence MFE | -20.78 |
Consensus MFE | -17.34 |
Energy contribution | -17.02 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.83 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13745419 103 + 20766785 UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCUUUUU---GUCUCCUCGGAAUAAUGAUGAUAAUCCUGAGGGGUCUGUUCUUCCACUCUAUUUCUCAC .((((((((((........)))))))))).((((((......((---(((...(((......))).)))))....))))))......................... ( -21.60) >DroSec_CAF1 46747 102 + 1 UGGGUAUUUCGUUUGUCUCUGAAAUACUCUUCCUUCUCCUUUUU---GUCUCCUCCGAAAAAUGAUGAUAAUCCUGAGGGGUCUGU-CUUCCUCUCUAUUUCUCAC .((((((((((........))))))))))...............---.........((((...(((....)))..((((((.....-...))))))..)))).... ( -20.00) >DroSim_CAF1 49506 102 + 1 UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCUUUUU---GUCUCCUCCGAAUAAUGAUGAUAAUCCUGAGGGGUCUGU-AUUCCUCUCUAUUUCUCAC .((((((((((........)))))))))).((((((......((---(((..(..........)..)))))....)))))).....-................... ( -20.20) >DroEre_CAF1 46648 102 + 1 UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCGAUUU---GUCUCCUCCGAAUAAUGAUGGUAAUCCUGAGGGGUCCGU-UUUCCUCUCUAUUUCUCAC .((((((((((........))))))))))..((.((....((((---(.......)))))...)).)).......((((((.....-...)))))).......... ( -21.90) >DroYak_CAF1 49065 105 + 1 UGGGUAUUUCGUUUGUCUCUGAAAUAUUCUCCCUUCGCCGCUUCACAGUCUCCUCCGAAUAACGAUGAUAAUCCUGAGGGGUCUGU-CUUCCUCUCUAUUUCUCAC .((((((((((........))))))))))...............((((.((((((.(......(((....)))).)))))).))))-................... ( -20.20) >consensus UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCUUUUU___GUCUCCUCCGAAUAAUGAUGAUAAUCCUGAGGGGUCUGU_CUUCCUCUCUAUUUCUCAC .((((((((((........)))))))))).((((((............((......)).....(((....)))..))))))......................... (-17.34 = -17.02 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:38 2006