| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,740,218 – 13,740,321 |
| Length | 103 |
| Max. P | 0.646447 |
| Location | 13,740,218 – 13,740,321 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -18.32 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13740218 103 - 20766785 CCCCCCACUCCAGUUCCCCUUCUUCGUGGC------CUCCGUGGUACCGGCUAC-UAUCUUUUCUAGGAGCUGUGGCACUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA ......((.(((.((((.........((((------....((((((...(((((-..((((....))))...)))))..)))))).....))))))))))).))...... ( -29.30) >DroPse_CAF1 38621 83 - 1 ---CCCGCUCCCCU-----------GUCGC------CGU-GU------AGUUACAUAUCUUCUCUAGGAGCUGUGGCAUUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA ---...(((((...-----------(..(.------.((-((------....))))..)..)....)))))((((((...)))))).(((((((....)))))))..... ( -22.70) >DroSec_CAF1 41572 94 - 1 CCCCCCACUCCCCUUC--------CGUGGC------CUC-CUGGUCCCGGCUAC-UAUCUUUUCUAGGAGCUGUGGCACUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA ..........((.(((--------(.((((------(((-((((....((....-..))....))))))).((((((...))))))....)))))))).))......... ( -29.10) >DroSim_CAF1 44323 94 - 1 CCCCCCACUCCCGUUC--------CGUGGC------CUC-GUGGUCCCGGCUAC-UAUCUUUUCUAGGAGCUGUGGCACUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA ..........((((((--------(.((((------...-(((((....(((((-..((((....))))...)))))...))))).....)))))))))))......... ( -33.00) >DroEre_CAF1 41436 108 - 1 CUCCCCUCUUCAGCCCACCUUCACCCUCGUCGUCAUCGC-CUCGUCCCGGCUAC-UAUCUUUUCUAGGAGCUGUGGCACUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA ...............................((...(((-(...(((.(((...-..((((....))))..((((((...))))))....))).)))..))))....)). ( -25.10) >DroYak_CAF1 43705 102 - 1 CUCCCCUUUCCCGCCCACCAUCUCCAUGGC------CUC-CUCGUCGCGGCUAC-UAUCUUUUCUAGGAGCUGUGGCACUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA ............((.((((((.(((.((((------...-...(((((((((.(-((.......))).)))))))))..((...))....)))))))))))))....)). ( -31.40) >consensus CCCCCCACUCCCGUUC________CGUGGC______CUC_CUGGUCCCGGCUAC_UAUCUUUUCUAGGAGCUGUGGCACUGCCACAAAAUGCCAGGAAUGGUGUUAAGCA .................................................(((...((((.(((((.((...((((((...)))))).....))))))).))))...))). (-18.32 = -18.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:35 2006