Locus 4174

Sequence ID 2R_DroMel_CAF1
Location 13,734,241 – 13,734,331
Length 90
Max. P 0.712343
window6711

overview

Window 1

Location 13,734,241 – 13,734,331
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 81.77
Mean single sequence MFE -27.78
Consensus MFE -20.93
Energy contribution -21.02
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.61
Structure conservation index 0.75
SVM decision value 0.38
SVM RNA-class probability 0.712343
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13734241 90 + 20766785
GCUCCUCGACCUCUUCUGCAAUCUCCUGUGGCAUCGUGAUAGUUUGAGUUAUUUGGAGCUGGCUGCUUUAUUGCUCGGGAGGAGUCGCAG
....((((((..(((((((...((((.(((((.(((........))))))))..))))...)).((......))..)))))..)))).)) ( -26.10)
>DroPse_CAF1 32213 81 + 1
UUUCCUCC------GUUCCGAU---CUGUGGCAUCGUGAUAGUUUGAGUUAUUUAGAGCUGGCUGCUUUAUUGCUCGGGAGGAACCCGGC
.(((((((------((..((((---(....).))))..))....(((((....((((((.....))))))..))))))))))))...... ( -26.20)
>DroEre_CAF1 34971 90 + 1
GCUCCUCGAUCACUUCUGCGAUCUCCUGUGGCAUCGUGAUAGUUUGAGUUAUUUGGAGCUGGCUGCUUUAUUGCUCGGGAGGAGUCGCAG
(((((((.(((((...(((.((.....)).)))..)))))...((((((....((((((.....))))))..)))))))))))))..... ( -30.30)
>DroYak_CAF1 37616 90 + 1
GCUCCUCGAUCACUUCUGCGAUCUCCUGUGGCAUCGUGAUAGUUUGAGUUAUUUGGAGCUGCCUGCUUUAUUGCUCGGGAGGAGUCGCAG
(((((((.(((((...(((.((.....)).)))..)))))...((((((....((((((.....))))))..)))))))))))))..... ( -30.30)
>DroAna_CAF1 37329 83 + 1
UCUCC-------UUUUUGCCUCCUCCUGUGGCAUCGUGAUAGUUUGAGUUAUUUAGAGCUGGCUGCUUUAUUGCUCGGGAGGCACCACCA
.....-------....((((((((.((((.((...)).))))...((((....((((((.....))))))..))))))))))))...... ( -27.60)
>DroPer_CAF1 32311 81 + 1
UUUCCUCC------GUUCCGAU---CUGUGGCAUCGUGAUAGUUUGAGUUAUUUAGAGCUGGCUGCUUUAUUGCUCGGGAGGAACCCGGC
.(((((((------((..((((---(....).))))..))....(((((....((((((.....))))))..))))))))))))...... ( -26.20)
>consensus
GCUCCUCG____CUUCUGCGAUCUCCUGUGGCAUCGUGAUAGUUUGAGUUAUUUAGAGCUGGCUGCUUUAUUGCUCGGGAGGAACCGCAG
.((((((..................((((.((...)).)))).((((((....((((((.....))))))..))))))))))))...... (-20.93 = -21.02 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:31 2006