Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,731,971 – 13,732,087 |
Length | 116 |
Max. P | 0.819291 |
Location | 13,731,971 – 13,732,087 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.41 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -23.27 |
Energy contribution | -23.00 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.25 |
Mean z-score | -1.80 |
Structure conservation index | 0.70 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13731971 116 + 20766785 ----UGUGUGCAACACGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUUGAAAAUCCGCAUCUGAUGUCGAUACAAGACCUCGAG ----.(((((...)))))(((((((.....)))))))..(((((.....)))))((((..(((((((((........)))).)))))...))))...(((.(((.......))).))).. ( -37.10) >DroPse_CAF1 30352 108 + 1 UGUGCCCGUGCAACAUGCGGCGCGUGAUUAAUGUGCCAAAUUGCAAAUUGCAGCACAGCGCCUAACUGUCAAUCAAAA-AGCUCCGAAAUCCGCACUCGACCUCGAC-----------AG .((((..((((.......(((((((.....)))))))....(((.....))))))).))))....(((((........-.((..........))....(....))))-----------)) ( -30.20) >DroEre_CAF1 32798 116 + 1 ----UGUGUGCAACACGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUCUGAAAUCCGCAUUUGAUGUCGAUACAAGACCUCGAG ----.(((((...)))))(((((((.....)))))))..(((((.....)))))((((..((((.((((........))))...))))..))))..((((.(((.......))).)))). ( -36.00) >DroYak_CAF1 35272 119 + 1 CGAGUGUGUGCAACAUGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUCUAAACUCCGCAUUUGAUGUCGAUACAAGACCUCGA- (((((((((((((..((((((((((.....))))))).....)))..))))(((((((.(((((.((((........))))...))))).)))))))........)))))....)))).- ( -40.00) >DroAna_CAF1 35372 116 + 1 ----UGUGUGCAACAUGCGGCGUAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAUCUGUCAAUCAAAGCAGCUCUAAAAUUCGCAUUUGCUGUCCAUGUGAGACCUCGAC ----...((...(((((.(((...((((..(((((((..(((((.....)))))..))))..)))..)))).....((((((..........))...))))))))))))...))...... ( -25.30) >DroPer_CAF1 30398 108 + 1 UGUGCCUGUGCAACAUGCGGCGCGUGAUUAAUGUGCCAAAUUGCAAAUUGCAGCACAGCGCCUAACUGUCAAUCAAAA-AGCUCCGAAAUCCGCACUCGACCUCGAC-----------AG .((((.(((((.......(((((((.....)))))))....(((.....))))))))))))....(((((........-.((..........))....(....))))-----------)) ( -32.30) >consensus ____UGUGUGCAACAUGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUCUAAAAUCCGCAUUUGAUGUCGAUACAAGACCUCGAG .......((((...(((((((((((.....)))))))..(((((.....)))))...))))....((((........))))...........))))........................ (-23.27 = -23.00 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:30 2006