Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,731,728 – 13,731,829 |
Length | 101 |
Max. P | 0.787570 |
Location | 13,731,728 – 13,731,829 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.89 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -17.44 |
Energy contribution | -16.83 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.12 |
Mean z-score | -2.02 |
Structure conservation index | 0.71 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13731728 101 + 20766785 -------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGCCG--GCAAAAAGUGAAUGUCACUUGCAAAUCAAAAACG----UUUU -------------((.(((..((.((((..(((((.((((......)))).)))).......(((((((((...))--))))))))..)))))).)))))............----.... ( -23.20) >DroPse_CAF1 30067 118 + 1 CUCCAAGGCCUUGCCCAGGGCAAACAUUUGCAAAUGUCAUAAUUACAUGAUAUUUGAUUAAAUUUUUGUCGAGCCACACAGAAAAGUGAAUGUCAUUUGCAAAUCAAA-CAA-CAUUAUU .......(((((....)))))....(((((((((((.(((..((((.((((.....))))..(((((((........))))))).))))))).)))))))))))....-...-....... ( -26.10) >DroSec_CAF1 32974 105 + 1 -------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGACG--GCAAAAAGUGAAUGUCACUUGCAAAUCAAAAUCGCGUUUUUU -------------...((.((((..((((((((.((.(((..((((.(((.......)))..(((((((((...))--)))))))))))))).)).)))))))).....)))).)).... ( -23.70) >DroEre_CAF1 32554 101 + 1 -------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGCCG--GCAAAAAGUGAAUGUCACUUGCAAAUCAAA-UAG-UUU--UU -------------((.(((..((.((((..(((((.((((......)))).)))).......(((((((((...))--))))))))..)))))).)))))........-...-...--.. ( -23.20) >DroAna_CAF1 35070 102 + 1 -------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGGUUUGAUUAAAUUUUUGUCGCGCCG--CAGAAAAGUGAAUGUCAUUUGCAAAUCAAACUCG-GUU--UU -------------(((.((......(((((((((((.(((..((((.((.(((.((((.........)))).))).--)).....))))))).)))))))))))....)).)-)).--.. ( -25.70) >DroPer_CAF1 30112 118 + 1 CUCCAAGGCCUUGCCCAGGGCAAACAUUUGCAAAUGUCAUAAUUACAUGAUAUUUGAUUAAAUUUUUGUCGAGCCACACAGAAAAGUGAAUGUCAUUUGCAAAUCAAA-CAA-CAUUAUU .......(((((....)))))....(((((((((((.(((..((((.((((.....))))..(((((((........))))))).))))))).)))))))))))....-...-....... ( -26.10) >consensus _____________GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGCCG__CAAAAAAGUGAAUGUCACUUGCAAAUCAAA_UAG_CUUU_UU ..................((((((.((((((((((.((((......)))).)))))..))))).)))))).............(((((.....)))))...................... (-17.44 = -16.83 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:28 2006