Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,728,769 – 13,728,880 |
Length | 111 |
Max. P | 0.808929 |
Location | 13,728,769 – 13,728,880 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -22.71 |
Energy contribution | -22.47 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.22 |
Structure conservation index | 0.95 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13728769 111 - 20766785 CCUGUUUGCCGGCAAUUAUAGUCUAGGCC-ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGUGGAUGACCACCCAAUAU (((((..((((((.......)))..))).-..(((((((((.((................))...)))))))))....)))))....(((..(((((....)))))..))). ( -25.69) >DroSec_CAF1 30064 111 - 1 CCUGUUUGCCAGCAAUUAUAGUCUAGGCC-ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGUGGAUGACCACCCAAUAU (((((..((((((.......).)).))).-..(((((((((.((................))...)))))))))....)))))....(((..(((((....)))))..))). ( -24.49) >DroSim_CAF1 32604 111 - 1 CCUGUUUGCCAGCAAUUAUAGUCUAGGCC-ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGAGGAUGACCACCCAAUAU .......((((((.......).)).))).-..(((((((((.((................))...)))))))))..((((.(((..(((((.....)))))...))).)))) ( -20.39) >DroEre_CAF1 29793 110 - 1 CCU-UAUGCCGGCAAUUAUAGUCCAGGCC-UCUGAUUAGUAUGUUCUUAUCCUUCCACUUACUAUUACCAAUCAUUAUAUAGGGAUUUAUCUGGUGGAUGGCCACCCAAUAU (((-(((((((((.......).)).))).-..(((((.(((.((................))...))).)))))....))))))...(((..(((((....)))))..))). ( -20.69) >DroYak_CAF1 32158 112 - 1 CCUAUAUGCCGGCAAUUAUAGUCUAGGCCCACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUGUAGGGAUUUAUCUGGUGGAUGGCCACCCAAUAU (((((((((((((.......)))..)))....(((((((((.((................))...)))))))))..)))))))....(((..(((((....)))))..))). ( -28.89) >consensus CCUGUUUGCCGGCAAUUAUAGUCUAGGCC_ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGUGGAUGACCACCCAAUAU (((((..((((((.......).)).)))....(((((((((.((................))...)))))))))....)))))....(((..(((((....)))))..))). (-22.71 = -22.47 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:27 2006