| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,725,595 – 13,725,691 |
| Length | 96 |
| Max. P | 0.942244 |
| Location | 13,725,595 – 13,725,691 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 86.78 |
| Mean single sequence MFE | -29.53 |
| Consensus MFE | -25.58 |
| Energy contribution | -26.25 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.942244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13725595 96 - 20766785 AUAGAGAAUCCCAUUUACACGGCUCAUCGAUCCAA----GGGAAAGGACUUGUGCCGCUGGCGAAAGUCGGCAUAUGGAUUCG----------AGUGCAUAUCAAUAUCA-- .....((((((.........(((.((....(((..----......)))..)).)))((((((....))))))....)))))).----------.................-- ( -29.70) >DroSec_CAF1 26861 96 - 1 AUAGAGAAUCCUAUUUACACGGCUCAUCGAUCCAA----GGGAAAGGACUUGUGCCGCUGGCGAAAGUCGGCAUAUGGAUUCG----------AGUGCAUAUCAAUAUCA-- .....((((((.........(((.((....(((..----......)))..)).)))((((((....))))))....)))))).----------.................-- ( -30.10) >DroSim_CAF1 29397 96 - 1 AUAGAGAAUCCCAUUUACACGGCUCAUCGAUCCAA----GGGAAAGGACUUGUGCCGCUGGCGAAAGUCGGCAUAUGGAUUCG----------AGUGCAUAUCAAUAUCA-- .....((((((.........(((.((....(((..----......)))..)).)))((((((....))))))....)))))).----------.................-- ( -29.70) >DroEre_CAF1 26588 96 - 1 AUAGAGAAUCCCAUUUACACGGCUCAUCGAUCCAA----GGGAAAGGACUUGUGCCGCUGGCGAAAGUCGGCAUAUGGAUUCG----------AAUGCAUAUCAAUAUCA-- .....((((((.........(((.((....(((..----......)))..)).)))((((((....))))))....)))))).----------.................-- ( -29.70) >DroYak_CAF1 28782 106 - 1 AUAGAGAAUCCCAUUUACACGGCACAUCGAUCCAA----GGGAAAGGACUUGUGCCGCUGGCGAAAGUCGGCAUAUGGAUUCGAAUGUAUUCGAAUGCAUAUCAAUAUCA-- ...((((((((.........((((((....(((..----......)))..))))))((((((....))))))....))))))((((((((....)))))).))....)).-- ( -38.00) >DroAna_CAF1 26278 90 - 1 AUGGAGAAUCCCAUUUAUACGGCUCAUCGAUCCGAAAGAGAAAAAGGACUUGUGCCGCUAGCGAAAGUCGGAAAAUGGAU----------------------CAGUAUCACA ..........((((((...((((.((....(((............)))..)).))))(..((....))..).))))))..----------------------.......... ( -20.00) >consensus AUAGAGAAUCCCAUUUACACGGCUCAUCGAUCCAA____GGGAAAGGACUUGUGCCGCUGGCGAAAGUCGGCAUAUGGAUUCG__________AGUGCAUAUCAAUAUCA__ .....((((((.........(((.((....(((............)))..)).)))((((((....))))))....)))))).............................. (-25.58 = -26.25 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:26 2006