Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,706,980 – 13,707,071 |
Length | 91 |
Max. P | 0.900042 |
Location | 13,706,980 – 13,707,071 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 87.98 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -21.72 |
Energy contribution | -23.12 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.75 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13706980 91 - 20766785 GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCACCGUCCCGUCCUGACGUCCUGACGUCUCGACGUCCUGACAUUCGUUUGGCGGCCAGCG (((.((((((.((..(........((.....))..(((.((((..(((((....)))))..))))....)))....)..))))))))))). ( -30.50) >DroSec_CAF1 8125 91 - 1 GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUCCCGUCCUGACGUCCUGACGUCCCGACGUCCGGACAUUUGUUUGGCGGCCAGCG (((.((((((.((..((........((((..(........)..).)))((((.(((((....))))).))))...))..))))))))))). ( -34.70) >DroSim_CAF1 8435 83 - 1 GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCAUCCCGUCCUGA--------CGUCCCGACGUCCUGACAUUUGUUUGGCGGCCAGCG (((.((((((.((..((.......((........))....(((..((--------(((....)))))..)))...))..))))))))))). ( -26.50) >DroEre_CAF1 7784 89 - 1 GCUUGACUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUC--GUCCUGACGUCCUGACGUUCUGACGUCCUGACAUUUGUUUGGCGGCCAGCA (((.(.((((.((..((........(.((.....)).)--(((..((((((..(.....).))))))..)))...))..))))))).))). ( -24.40) >DroYak_CAF1 8868 81 - 1 GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUC--GUCCUGACGUCCUG--------ACGUCCUGACAUUUGUUUGGCGGCCAGCA (((.((((((.((..((........(.((.....)).)--(((..(((((....--------)))))..)))...))..))))))))))). ( -28.90) >consensus GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUCCCGUCCUGACGUCCUGACGUCCCGACGUCCUGACAUUUGUUUGGCGGCCAGCG (((.((((((.((..(.........(.((.....)).)..(((..((((((..........))))))..)))....)..))))))))))). (-21.72 = -23.12 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:22 2006