Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,695,813 – 13,695,933 |
Length | 120 |
Max. P | 0.580849 |
Location | 13,695,813 – 13,695,933 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -34.23 |
Consensus MFE | -16.36 |
Energy contribution | -16.14 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.36 |
Mean z-score | -2.03 |
Structure conservation index | 0.48 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13695813 120 - 20766785 UCAUCCUUGUUGCGCUCUUUUUCGACCAUUUUCAUGGACAACAUCGCAUUGUCCAGCUGCUCCUGCAGUGAACCAACAUCGAUGUGGCUCACAUCCAAGUUGGCCAGAUUGAAAUAGACC .......(((((.(.((.................(((((((.......)))))))(((((....))))))).))))))(((((.(((((.((......)).))))).)))))........ ( -34.50) >DroVir_CAF1 3582 120 - 1 UCGAUUUUGUUGUGUUCCUGUUCCUUCAUUUUCAUGGCUAGAUUUGCAUUGUCCAGCUGCUCCUGCAGCGAGCCCACGUCGAUGCGACUCACGUCCAAAUUGGCCAGAUUGAAGUAGACA ...................(((.(((((...((.(((((((....((((((.(..(((((....)))))(....)..).))))))(((....)))....))))))))).)))))..))). ( -32.80) >DroGri_CAF1 2851 120 - 1 UCAACUUUGGUGCAUUCCUGCUCCUUCAUUUUCAUUGCUAGUUUCGCAUUGUCCAGCUGCUCCUGCAGCGAGCCCACAUCGAUGUGGCUCACAUCCAAAUUGGCCAGAUUGAAGUAGACG ((.(((((((.(((....))).))............((((((((.(...(((...(((((....)))))(((((.(((....))))))))))).).))))))))......))))).)).. ( -35.30) >DroWil_CAF1 353 120 - 1 UCUAACUUUUUAGUCUCUUUUUCCUUGAUUUUCAAGGAAAGGUUGGCAUUAUCCAGUUGCUCUUGCAAGGUGCCCACAUCAAUGCGGCUAACAUCCAGGUUAGCCAGGUUGAAAUAGACG ............((((..(((((((((.....)))))))))((.((((((......((((....)))))))))).)).(((((..(((((((......)))))))..)))))...)))). ( -39.40) >DroAna_CAF1 7752 120 - 1 UCAAUCUUUCCGUACUCCUUUUCCUUCAUUUUCAGUGCCAGGUGGGCAUUAUCCAGCUGCUCCUGUAGCGAUCCCACAUCGAUGCGGCUGACAUCCAAGUUAGCCAAAUUGAAGUAGACC ...................(((.(((((.(((..((..(..(((((....(((..(((((....)))))))))))))...)..))(((((((......)))))))))).))))).))).. ( -31.60) >DroPer_CAF1 6195 120 - 1 UCCACCUUUUUGAACUCCUUCUCCUUCAUUUUCACGGCUAGAUUUGCGUUGUCCAGCUGCUCCUGCAGUGAGCCAACAUCGAUCCGACUAACGUCCAGGUUAGCCAGGUUGAAGUAGACG ...................(((.(((((....(..((((.((((((.((((.(..(((((....)))))..).))))........(((....)))))))))))))..).))))).))).. ( -31.80) >consensus UCAACCUUGUUGCACUCCUUUUCCUUCAUUUUCAUGGCUAGAUUCGCAUUGUCCAGCUGCUCCUGCAGCGAGCCCACAUCGAUGCGGCUCACAUCCAAGUUAGCCAGAUUGAAGUAGACG .............................(((((...........((((((....(((((....)))))..........))))))((((.((......)).))))....)))))...... (-16.36 = -16.14 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:21 2006