Locus 4164

Sequence ID 2R_DroMel_CAF1
Location 13,692,662 – 13,692,775
Length 113
Max. P 0.844610
window6698

overview

Window 8

Location 13,692,662 – 13,692,775
Length 113
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 87.43
Mean single sequence MFE -38.96
Consensus MFE -30.02
Energy contribution -30.86
Covariance contribution 0.84
Combinations/Pair 1.13
Mean z-score -1.93
Structure conservation index 0.77
SVM decision value 0.76
SVM RNA-class probability 0.844610
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13692662 113 - 20766785
CGCCGAAGAUGGCCGCUCACAGCA------GCUUCAGCAUCAACAGUCAGAGAACGGCAGCAGCGCCAACACGUCCGGCCAGGAUCAGGAUACCUUUGAACCGCGGCCGUCGGCAAAGA
.(((((...(((((((........------((....))........((((((...(((......))).....((((.....))))........))))))...))))))))))))..... ( -39.00)
>DroSec_CAF1 3980 113 - 1
CGCCGAAGCUGGCCGCUCACAGCA------GCUUCAGCAUCAACAGUCAGAGAACGGCAGCAGCGCCAACACGUCCGGCCAGGAUCAAGAUACCUUUGAUCCGCGGCCGACUGCAAAAA
.((.(((((((.(........)))------))))).)).....(((((.......(((......))).........((((.((((((((.....))))))))..)))))))))...... ( -44.00)
>DroSim_CAF1 4007 113 - 1
CGCCGAAGCUGGCCGCUCACAGCA------GCUUCAGCAUCAACAGUCAGAGAACGGCAGCAGCGCCAACACGUCCGGCCAGGAUCAAGAUACCUUUGAUCCGCGGCCAACUGCAAAAA
.((((...(((((.((.....)).------((....)).......)))))....)))).((((((......))...((((.((((((((.....))))))))..))))..))))..... ( -40.80)
>DroEre_CAF1 3948 119 - 1
CGUCGAAGAUGGCCGCCCACAGCAACAGCAGCUUCAACAUCAACAGUCAGAGAACGGCAGCAGCGCCAACACCUCCGCCCAUGAUCAGGAUACCUUUGAUCCGCGGCCGUCGGCAAAAA
.(((((...(((((((.....((....))................(((((((...(((......)))......(((...........)))...)))))))..))))))))))))..... ( -34.40)
>DroYak_CAF1 3856 110 - 1
CGCCGAAGAUGGCCGCUCACAGCAACAGC---------AUCAACAGUCGGAGAACGGCAGCAGCGCCAAUACCUCCGCCCAGGAUCAGGAUGCCUUUGAUCCGCGUCCGUCGGCAAAGA
.(((((...(((.(((.....((....))---------.......(.(((((...(((......))).....))))))...((((((((.....))))))))))).))))))))..... ( -36.60)
>consensus
CGCCGAAGAUGGCCGCUCACAGCA______GCUUCAGCAUCAACAGUCAGAGAACGGCAGCAGCGCCAACACGUCCGGCCAGGAUCAGGAUACCUUUGAUCCGCGGCCGUCGGCAAAAA
.(((...(((((((((.......................................(((......)))..............((((((((.....))))))))))))))))))))..... (-30.02 = -30.86 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:18 2006