Locus 4163

Sequence ID 2R_DroMel_CAF1
Location 13,689,217 – 13,689,337
Length 120
Max. P 0.514241
window6697

overview

Window 7

Location 13,689,217 – 13,689,337
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.67
Mean single sequence MFE -47.63
Consensus MFE -39.26
Energy contribution -39.60
Covariance contribution 0.34
Combinations/Pair 1.31
Mean z-score -1.29
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.514241
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13689217 120 + 20766785
CAACGACUGUGACUACAAGUGGGUGCCCGGACAGCAUGGAACAUAUCCGCGGGAUGCUCUGAACACGGGCUACUCCGAGCUGGGUGAGGUCACCUACACGGGUCGUGGUCUUUACCAGGG
....(((..(((((....(((((((((((..((((..(((.....))).((((..((((.......))))...)))).))))..)).)).)))))))...)))))..))).......... ( -48.00)
>DroSec_CAF1 525 120 + 1
CAACGACUGUGACUACAAGUGGGUGCCCGGACAGCAUGGAACUUUUCCGCGGGAUGCCCUGAACACGGGCUAUUCCGAGCUGGGUGAGGUCACCUACACGGGUCGCGGUCUUUACGAGGG
....((((((((((....(((((((((((..((((..(((.....))).((((((((((.......)))).)))))).))))..)).)).)))))))...)))))))))).......... ( -56.90)
>DroSim_CAF1 546 120 + 1
CAACGACUGUGACUACAAGUGGGUGCCCGGACAGCAUGGAACUUUUCCGCGGGAUGCCCUGAACACGGGCUAUUCCGAGCUGGGUGAGGUCACCUACACGGGUCGCGGUCUUUACGAGGG
....((((((((((....(((((((((((..((((..(((.....))).((((((((((.......)))).)))))).))))..)).)).)))))))...)))))))))).......... ( -56.90)
>DroEre_CAF1 548 120 + 1
CAACGACUGUGACCACAAGUGGGUGCCCGGACACCGUGGAAGUUAUCCGGUGGAUGCCCUGACCACGGGCUACUCCGAAGUGGGUGAGGUCACCUUUACGGGCCGUGGUCUUUACGAGGG
....(((..((.(((....)))..(((((..(((..((((.((...((.((((.........)))).))..))))))..)))((((....))))....)))))))..))).......... ( -43.90)
>DroYak_CAF1 546 120 + 1
CACCGACUGUGAUCUUAAGUGGGUGCCCGGACAGCAUGGAUCUUAUCCGCAGGAUGCGCUGAACACGGGCUAUUCUGAGCUGGGUGAGGUCACUUACACGGGUCGCGGUCUAUACGAGGG
....(((((((((((...(((((((((((..((((..((((...)))).((((((((.(((....))))).)))))).))))..)).)).)))))))..))))))))))).......... ( -49.20)
>DroAna_CAF1 532 120 + 1
GAGCGACUGUGAUCACAAAUGGGUGGCCGGCGAGGGGGGAAGUUUUCCUGAGGAUGCCUUACAAUCCGGAUAUGCUGACAACGGUGAAGUAACCUAUACCGGACGUGGUCUCCACAAUGG
....(((..((.((((......))))((((....(..(..(((..(((...((((........)))))))...)))..)..)(((......)))....)))).))..))).......... ( -30.90)
>consensus
CAACGACUGUGACCACAAGUGGGUGCCCGGACAGCAUGGAACUUAUCCGCGGGAUGCCCUGAACACGGGCUAUUCCGAGCUGGGUGAGGUCACCUACACGGGUCGCGGUCUUUACGAGGG
....((((((((((....(((((((((((..((((.((((.....))))((((((((((.......)))).)))))).))))..)).)).)))))))...)))))))))).......... (-39.26 = -39.60 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:17 2006