Locus 4161

Sequence ID 2R_DroMel_CAF1
Location 13,685,879 – 13,685,990
Length 111
Max. P 0.650708
window6693

overview

Window 3

Location 13,685,879 – 13,685,990
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.66
Mean single sequence MFE -45.43
Consensus MFE -21.62
Energy contribution -22.76
Covariance contribution 1.14
Combinations/Pair 1.17
Mean z-score -2.05
Structure conservation index 0.48
SVM decision value 0.24
SVM RNA-class probability 0.650708
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13685879 111 + 20766785
GCGGUCCUGCAGCCUCUUUUGUAGCAGCUCAAUCUGCUCCUCUGUGGGCUGCACCAAGACAUCCUUGCCCCGGAUGCUGGAGUAGUCCACACUCAUGGCGGCCAUCUGCUG
((((....((.(((......(.(((((......))))).)..((((((((((.(((.(.(((((.......))))))))).)))))))))).....))).))...)))).. ( -44.00)
>DroVir_CAF1 2163 111 + 1
GCGAUCGAGCAGCCGUCGCUUGAGCAGCUGCAGCUGCGACUCUGUCGGCUCCACGAGCACAUCCUUGGCCCGUAUGCUCGAGUAGUCGAUGCUCAGCUCUUGCAGCUGCUG
((((.((......))))))...(((((((((((..((......(((((((.(.((((((.((.........)).)))))).).))))))).....))..))))))))))). ( -46.70)
>DroPse_CAF1 1737 111 + 1
GCGGUCAAGGAGCCGCUUCUGGAGCAGCUCCAUUUGACCCUCAUUCGGCUCCACCAGCACAUCCUUGCCUCGAAUGCUGGAGUAGUCGAUGGUCAGGCUGGCCAUUUGCUG
..(((((.(((((.((((...)))).))))).(((((((.....((((((.(.((((((..((........)).)))))).).)))))).))))))).)))))........ ( -44.40)
>DroMoj_CAF1 1957 111 + 1
GCGAUCGAGCAGACGCCGCUUGAGCAGCUCCAGCUGCUCCUCAUUGGGCGCCACGAGCACAUCCUUGCCUCGAAUGCUGGAGUAGUCGAUGCUUAACUGUUGCGGCUGCUG
.......(((((.(((.(((((((((((((((((.((.((.....))))....((((((......)).))))...))))))))......)))))))..)).))).))))). ( -43.00)
>DroAna_CAF1 1727 111 + 1
GCGAUCCUGGAGCCGCUUCUGCAGCAGCUCCAACUGCUCGGCAGUGGGCUUCACCAGCACAUCCUUCCCGCGGAUGCUGGAGUAGUCCACGCUGAGCGCCGCCAUCUGCUG
(((....((((((.(((.....))).))))))...(((((((.(((((((.(.((((((..(((.......))))))))).).))))))))))))))..)))......... ( -54.40)
>DroPer_CAF1 1732 111 + 1
GCGAUCAAGGAGCCGCUUCUGGAGCAGCUCCAUUUGACCCUCAUUCGGCUCCACCAGCACAUCCUUGCCUCGAAUGCUGGAGUAGUCGAUGGUCAGGCUGGCCAUCUGCUG
(((((...(((((((.....((..(((......)))..)).....))))))).((((((..((........)).))))))....)))(((((((.....))))))).)).. ( -40.10)
>consensus
GCGAUCAAGCAGCCGCUUCUGGAGCAGCUCCAUCUGCUCCUCAGUCGGCUCCACCAGCACAUCCUUGCCUCGAAUGCUGGAGUAGUCGAUGCUCAGCCCGGCCAUCUGCUG
(((.....(((((.(((.....))).))))).............((((((.(.((((((...............)))))).).)))))).................))).. (-21.62 = -22.76 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:13 2006