| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,444,071 – 2,444,189 |
| Length | 118 |
| Max. P | 0.602959 |
| Location | 2,444,071 – 2,444,189 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.91 |
| Mean single sequence MFE | -49.68 |
| Consensus MFE | -32.93 |
| Energy contribution | -32.72 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2444071 118 - 20766785 GGGACCGGGAUCUGCUGGGCGCCAGCGAUUCGGAGCUGAGUCGCUGCUAUGUGAGCGAGACGAGUUCGCUGACCGGUGGCCUAACGGCCGGCGGCUACGAGAAUCCCACUUUCGCGCA (..(..(((((((..(((.(((((((((((((....)))))))))(((..((.((((((.....)))))).)).)))((((....)))))))).)))..)).)))))..)..)..... ( -54.60) >DroVir_CAF1 6752 112 - 1 A------UCAGCAAUUGAAUGCCUCGGACUCGGAGCUGAGUCGCUGUUAUGUGAGCGAGACGAGCUCGCUGACCGGCGGCAUAUUGGCCGGCGGCUAUGAGAAUCCGACAUUCGCGCA .------...((...((((((..(((((((((((((((..(((((........)))))..).)))))((((.(((((.(.....).)))))))))..))))..))))))))))).)). ( -45.60) >DroPse_CAF1 6452 111 - 1 -------AGAGCUUCUGGGCGCCAGCGAUUCGGAGCUGAGUCGCUGCUAUGUGAGCGAGACGAGUUCGCUGACCGGCGGCCUGACAGCGGGCGGCUACGAGAACCCCACGUUCGCCCA -------...(((((.((.(((((((((((((....))))))))).....((.((((((.....)))))).)).)))).)).)).)))((((((..(((.(.....).))))))))). ( -51.70) >DroGri_CAF1 6796 112 - 1 A------UCAGCAGUUGGGCGCCAGCGAUUCGGAGCUGAGUCGCUGCUAUGUGAGCGAGACCAGUUCACUGACUGGCGGCAUACUGGCCGGUGGCUAUGAGAAUCCCACAUUUGCGCA .------...((((.((((.((((((((((((....)))))))))((((.((((((.......))))))....)))))))....(((((...))))).......))))...))))... ( -42.70) >DroMoj_CAF1 6708 112 - 1 A------GCGUCAACUGGGCGCCAGCGACUCGGAGCUGAGUCGCUGCUACGUGAGCGAGACGAGCUCGUUGACGGGCGGACUCCUGGCCGGGGGCUACGAGAAUCCCACAUUCGCGCA .------((((....(((((((((((((((((....)))))))))....(((.((((((.....)))))).)))))))..(((.(((((...))))).)))...)))).....)))). ( -54.20) >DroAna_CAF1 5920 118 - 1 GGGACAGGGACCUGCUUGGAGCCAGCGAUUCGGAGCUGAGUCGUUGCUAUGUGAGCGAGACGAGUUCGCUGACCGGCGGGAUGACGGCCGGCGGCUACGAGAAUCCCACAUUUGCGCA (((((((....)))((((.(((((((((((((....)))))))))((...((.((((((.....)))))).))((((.(.....).)))))))))).))))..))))........... ( -49.30) >consensus A______GCAGCAGCUGGGCGCCAGCGAUUCGGAGCUGAGUCGCUGCUAUGUGAGCGAGACGAGUUCGCUGACCGGCGGCAUAACGGCCGGCGGCUACGAGAAUCCCACAUUCGCGCA ..................((((((((((((((....))))))))))((.(((((((.......))))((((.(((((.(.....).))))))))).)))))............)))). (-32.93 = -32.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:04 2006