Locus 4158

Sequence ID 2R_DroMel_CAF1
Location 13,677,142 – 13,677,237
Length 95
Max. P 0.718698
window6687

overview

Window 7

Location 13,677,142 – 13,677,237
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -37.33
Consensus MFE -23.02
Energy contribution -23.44
Covariance contribution 0.42
Combinations/Pair 1.26
Mean z-score -1.65
Structure conservation index 0.62
SVM decision value 0.39
SVM RNA-class probability 0.718698
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13677142 95 - 20766785
ACAACAGCCAGUUUCCAGGUGGAAU-----UGCCUUGUCUGGCUAACUCACCGCUGAACUGUCGCGCCUUGGCGGCGGCCACGGAUGAGCCGCUGCCACC
......((((((((...(((((...-----.(((......)))....)))))...))))))..))....((((((((((((....)).)))))))))).. ( -40.70)
>DroPse_CAF1 1269 100 - 1
ACAACAGCCACAGUUGGAGUGAAACGGGGGAUCAUUCUCUGACACACUCACCGCUGAACUGACGCGCCUUGGUGGCAGCCACCGUUGAGCUGCUACCUGC
....(((...((((.((((((...(((((((...)))))))...))))).).))))..)))....((...(((((((((((....)).))))))))).)) ( -36.60)
>DroEre_CAF1 1320 95 - 1
ACAACAGCCAGUUUCCAGGUGGAAG-----UGCCUCGUCUGGCUAACUCACCGCUGAACUGUCGCGCCUUGGCGGCGGCCACGGAUGAGCCGCUGCCACC
......((((((((...(((((...-----.(((......)))....)))))...))))))..))....((((((((((((....)).)))))))))).. ( -40.70)
>DroYak_CAF1 1323 95 - 1
ACAACAGCCAGUUUCCAGGUGGAAG-----UGCCUCGUCUGGCUAACUCACCGCUGAACUGUCGCGCCUUGGCGGCGGCCACGGAUGAGCCGCUGCCACC
......((((((((...(((((...-----.(((......)))....)))))...))))))..))....((((((((((((....)).)))))))))).. ( -40.70)
>DroAna_CAF1 1228 96 - 1
ACAACAGCCAGUUUCCGGUUGGAACA----CGUUUUUUGUUGCUCACUCACCGCUAAACUGUCGCGCCUUGGCAGCGGCCACGGAGGAACUGCUGGCCCC
......(((((((((((((.((((((----.......)))).)).)))..(((.......(((((((....)).)))))..))).))))..))))))... ( -28.70)
>DroPer_CAF1 1269 100 - 1
ACAACAGCCACAGUUGGAGUGAAACGGGGGAUCCUUCUCUGACACACUCACCGCUGAACUGACGCGCCUUGGUGGCAGCCACCGUUGAGCUGCUACCUGC
....(((...((((.((((((...(((((((...)))))))...))))).).))))..)))....((...(((((((((((....)).))))))))).)) ( -36.60)
>consensus
ACAACAGCCAGUUUCCAGGUGGAAC_____UGCCUUGUCUGGCUAACUCACCGCUGAACUGUCGCGCCUUGGCGGCGGCCACGGAUGAGCCGCUGCCACC
......((((((((...(((((.........................)))))...))))))..)).....((((((((((......).)))))))))... (-23.02 = -23.44 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:07 2006