Locus 4151

Sequence ID 2R_DroMel_CAF1
Location 13,657,839 – 13,657,932
Length 93
Max. P 0.995912
window6678

overview

Window 8

Location 13,657,839 – 13,657,932
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 72.58
Mean single sequence MFE -22.17
Consensus MFE -14.98
Energy contribution -14.56
Covariance contribution -0.42
Combinations/Pair 1.16
Mean z-score -2.76
Structure conservation index 0.68
SVM decision value 2.63
SVM RNA-class probability 0.995912
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13657839 93 + 20766785
UGCCCUUUCUUAUCUA--AGCUUCUAGCAACUUCUACCCAUUGGUUGGUCAGAUUU--AACCCAUUUUGACACGACUAAGAUUCAUAGU-UGCCAGAG
................--....(((.((((((........(((((((((((((...--.......)))))).))))))).......)))-))).))). ( -23.16)
>DroPse_CAF1 14738 82 + 1
UGUCCU-------C--------UAUAGCAACUUCUACCCAUUGGUUGGUCAAACUAGCAUUCCUCGUUGAUCCGACUAAGAUUCAAAGU-UGCCAGAG
....((-------(--------(...(((((((.......((((((((((((...((.....))..)))).))))))))......))))-))).)))) ( -22.12)
>DroSec_CAF1 14328 93 + 1
UGCCCUUUCUUAUCUA--GGCUUCUAGCAACUUCUACCCAUUGGUUGGUCAGAUUU--AACCCAUUUUGACACGACUAAGAUUCACUGU-UGCCAGAG
.(((............--))).(((.(((((.........(((((((((((((...--.......)))))).)))))))........))-))).))). ( -23.83)
>DroWil_CAF1 16874 84 + 1
UC--------UACUUAGA---GAAUGGCAACUUCUACCCAUUGGUUGGUCAAAUU---AAUUUAUUUUGAUACGACUAAGAUUCAAAGUUUGCUAGAU
..--------........---...(((((((((.......(((((((((((((..---.......)))))).)))))))......))).))))))... ( -16.92)
>DroYak_CAF1 14619 95 + 1
UCCCCUUGCAUAUCUAGAGGUUUCCAGCAACUUCAACCCAUUGGUUGGUCAGAUUU--AACCCUUUUUGACACGACUAAGAUUCAUAGU-UGCCAGAG
...((((.........))))..((..((((((........(((((((((((((...--.......)))))).))))))).......)))-)))..)). ( -23.06)
>DroAna_CAF1 13966 77 + 1
------------------AACUUGCAGCAACUUCUACCCAUUGGUUGGUCGAAUAA--AUCUCUUUUCGACACGACUAAGAUUCAAAGU-UGCUAGAA
------------------.......((((((((.......(((((((((((((...--.......)))))).)))))))......))))-)))).... ( -23.92)
>consensus
UGCCCU____UAUCUA___GCUUCUAGCAACUUCUACCCAUUGGUUGGUCAAAUUU__AACCCAUUUUGACACGACUAAGAUUCAAAGU_UGCCAGAG
..........................((((((........(((((((((((((............)))))).))))))).......))).)))..... (-14.98 = -14.56 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:58 2006