Locus 4150

Sequence ID 2R_DroMel_CAF1
Location 13,657,662 – 13,657,758
Length 96
Max. P 0.788894
window6677

overview

Window 7

Location 13,657,662 – 13,657,758
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 76.84
Mean single sequence MFE -22.78
Consensus MFE -12.43
Energy contribution -12.57
Covariance contribution 0.14
Combinations/Pair 1.25
Mean z-score -1.87
Structure conservation index 0.55
SVM decision value 0.58
SVM RNA-class probability 0.788894
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13657662 96 + 20766785
CUCGCAACUCCUACCCAUUGGUUGGUCAGAUUU--AUCUCUUUUUGACACGACUAAGAUUCAAUGU-UGCCAGAGAAAGCAAUGCAACUUACCAUGUAG
((((((((.........(((((((((((((...--.......)))))).)))))))........))-)))..))).......((((........)))). ( -21.43)
>DroVir_CAF1 15480 94 + 1
GUGGCAACUUCUACCCAUUGGUUGGUCAAAAGU--CUUAUAUUUUGAGCUGACUAAGAUUCAAAGU-UGCAAGAAUAAU--ACGUGACUUACCGUGUAG
...(((((((.......(((((..(((((((..--......)))))).)..)))))......))))-))).......((--(((........))))).. ( -23.42)
>DroPse_CAF1 14578 98 + 1
AUAGCAACUUCUACCCAUUGGUUGGUCAAACUAGCAUUCCUCGUUGAUCCGACUAAGAUUCAAAGU-UGCCAGAGAAAGGAAUGCAACUUACCAUGUAG
...(((((((.......((((((((((((...((.....))..)))).))))))))......))))-)))((..(.(((........))).)..))... ( -20.62)
>DroWil_CAF1 16554 96 + 1
UUCGCAACUUCUACCCAUUGGUUGGUCAAAUUA--AUUU-AUUUUGAUACAACUAAGAUUCAAAGUUUGCUAGAUCAAUGUACGUGACUUACCAUGUGA
...(((((((.......(((((((((((((...--....-..)))))).)))))))......))).))))..........((((((......)))))). ( -19.72)
>DroYak_CAF1 14444 96 + 1
CCAGCAACUUCAACCCAUUGGUUGGUCAGAUUU--AACCCUUUUUGACACGACUAAGAUUCAUAGU-UGCCAGAGAAAGUCAUGCAACUUACCAUGCUG
.(((((...........(((((((((((((...--.......)))))).))))))).......(((-(((..((.....))..)))))).....))))) ( -23.80)
>DroMoj_CAF1 15699 95 + 1
UAGGCAACUUAUACCCAUUGGUUGGUCAGA-UU--AUCCCAUUUUGAGCCAGCUAAGAUUCAAAGU-UGCUAAAUUAAUUUGCGUGACUUACCAUGUAA
..((((((((.......(((((((((((((-..--.......))))).))))))))......))))-))))........(((((((......))))))) ( -27.72)
>consensus
CUAGCAACUUCUACCCAUUGGUUGGUCAAAUUU__AUCCCAUUUUGACACGACUAAGAUUCAAAGU_UGCCAGAGAAAGGAACGCAACUUACCAUGUAG
...(((((((.......(((((((((((((............)))))).)))))))......)))).)))............................. (-12.43 = -12.57 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:57 2006