Locus 4149

Sequence ID 2R_DroMel_CAF1
Location 13,652,432 – 13,652,527
Length 95
Max. P 0.561681
window6676

overview

Window 6

Location 13,652,432 – 13,652,527
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 75.85
Mean single sequence MFE -25.45
Consensus MFE -16.57
Energy contribution -15.77
Covariance contribution -0.80
Combinations/Pair 1.37
Mean z-score -1.16
Structure conservation index 0.65
SVM decision value 0.06
SVM RNA-class probability 0.561681
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13652432 95 + 20766785
UGCUGCAAAUGUCGGAACUGGUUCCACACCCAAUGCAUGCAGAACUUCAAGAAGAAGCUGCUGCGCGGCGAUAUGUACGUA---UUC-AA-UUGCUUU--AC
.(((((...(((.((((....)))))))......(((.((((..((((.....)))))))))))))))).........(((---...-..-.)))...--.. ( -27.10)
>DroVir_CAF1 8874 99 + 1
UGCUGUAAGUGCAGGAACUGGUUUCACACCCAAUGCAUGCAGAACUUUAAGCGCAAGCUGCUGCGCGGCGACAUGUAAGUG---UGUCAUACCAAUUUCCCA
(((.......)))((((.((((..(((((....(((((((.........(((....)))(((....)))).)))))).)))---))....))))..)))).. ( -29.90)
>DroGri_CAF1 9457 84 + 1
UGCUGCAAGUGCAGAAACUGGUUUCACACCCAGUGCAUGCAGAACUUUAAGCGCAAGCUGCUGCGCGGCGACAUGUAAGUA---UAU---------------
.(((((..((((....(((((........)))))))))((((.......(((....))).)))))))))............---...--------------- ( -28.40)
>DroWil_CAF1 10721 96 + 1
UGUUGCAAAUGUCGUAAUUGGUUUCAUACUCAAUGCAUGCAGAAUUUCAAAAAAAAACUGCUGCGCGGUGAUAUGUAAGUGAAAUGA-GA-UUGA--A--AA
..((((.......))))(..(((((((..(((..(((.((((..(((.....)))..)))))))(((......)))...))).))))-))-)..)--.--.. ( -16.70)
>DroYak_CAF1 8914 95 + 1
UGUUGCAAAUGUCGGAACUGGUUCCACACACAAUGCAUGCAGAACUUUAAACAAAAGCUGCUGCGCGGCGAUAUGUACGUA---UUC-AU-UAGCUUU--UC
.(((((...(((.((((....)))))))......(((.((((..((((.....))))))))))))))))(((((....)))---)).-..-.......--.. ( -22.00)
>DroMoj_CAF1 9146 99 + 1
UGCUGCAAGUGCAAGAACUGGUUUCACACCCAAUGCAUGCAGAAUUUUAAGCGCAAGCUGCUGCGCGGCGAUAUGUAAGUG---UGUCAGGUUGAUUUUCCC
.(((((..(((((.....(((........))).)))))((((.......(((....))).)))))))))(((((......)---)))).((........)). ( -28.60)
>consensus
UGCUGCAAAUGCAGGAACUGGUUUCACACCCAAUGCAUGCAGAACUUUAAGCACAAGCUGCUGCGCGGCGAUAUGUAAGUA___UGU_AA_UUGAUUU__AC
.(((((.......((((....)))).........(((.((((..(((.......)))))))))))))))................................. (-16.57 = -15.77 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:57 2006