Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,642,189 – 13,642,288 |
Length | 99 |
Max. P | 0.858078 |
Location | 13,642,189 – 13,642,288 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 70.86 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -15.82 |
Energy contribution | -16.26 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.55 |
Structure conservation index | 0.65 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13642189 99 - 20766785 ------AUCAAAUGGAGGUCAAGGAACUGUGUUAUAUAAAA------ACAAAAGCUGACCCCAAAUGGAGCUUAAUUGUGGCAUAAAUUGGGUGG-AACAAUCAACCCCCCC ------......(((.(((((........((((.......)------))).....))))))))...((.(((.......))).......((((.(-(....)).)))))).. ( -19.52) >DroSec_CAF1 928 89 - 1 CUU---AUCAAAAGGGGGUCAAGGAAC--------------------ACAAAAGCUGACCCCAAAUGGAGCUCAAUUGUGGCAUAAAUUGGGUGGGCGCAAGCUACAACGCU ...---.((.....(((((((......--------------------........))))))).....))((((((((........)))))))).(((....)))........ ( -26.04) >DroSim_CAF1 921 92 - 1 CUUAUUAUCAAAAGGGGGUCAAGGAAC--------------------ACAAAAGCUGACCCCAAAUGGAGCUUAAUUGUGGCAUAAAUUGGGUAGGCGCAAGCUACAACUCU .......((.....(((((((......--------------------........))))))).....))((((((((........)))))))).(((....)))........ ( -23.84) >DroYak_CAF1 915 98 - 1 --------------GCGGUCAAGGAGCUGUGUUAUGUAAAAUAGCUGACAAAAAUUGACCCCGAUUUGAGCUUAAUUGUGGCAUAAAUUGGGUGGGCGCAAGCUACGACACU --------------..((((((.......(((((.((......)))))))....))))))((((((((.(((.......))).))))))))((((((....)))....))). ( -28.50) >consensus ______AUCAAAAGGGGGUCAAGGAAC____________________ACAAAAGCUGACCCCAAAUGGAGCUUAAUUGUGGCAUAAAUUGGGUGGGCGCAAGCUACAACACU ..............(((((((..................................))))))).......((((((((........)))))))).(((....)))........ (-15.82 = -16.26 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:56 2006