| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,639,235 – 13,639,343 |
| Length | 108 |
| Max. P | 0.809657 |
| Location | 13,639,235 – 13,639,343 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.13 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -8.96 |
| Energy contribution | -9.64 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13639235 108 + 20766785 UAUCUAA-------A-----AGUUCCUUCCUGUACAUAGAUAGAUGGGAAUUCUUCUAGACUUGGAAAACCUAUUUAACCCAUGUUACCCCUUCUUGUUUACAUGGAGUUUCGAUUGAAU ..((((.-------(-----(((((((..((((......))))..)))))..))).))))................(((((((((.((........))..)))))).))).......... ( -19.40) >DroSec_CAF1 183194 106 + 1 UAUCUAA-------A-----AAUUGAAUCCUGUACAUAGAU--UUGGAAAUUCUUCUAGACUUGGGAAACCUAUUUAACCCAAGUUACCCCUUUUUGUUUACAUGGAGUUUCGAUUGAAU .......-------.-----((((((((((((((.(((((.--.(((((....)))))((((((((............)))))))).......))))).)))).)))..))))))).... ( -24.50) >DroSim_CAF1 183099 104 + 1 --UCUAA-------A-----AGUUGAAUCCUGUACAUAGAU--UUGGAAAUUCUUCUAGACUUGGGAAACCUAUUUAACCCAAGUUACCCCUUUUUGUUUACAUGGAGUUUCGAUUGAAU --.....-------.-----((((((((((((((.(((((.--.(((((....)))))((((((((............)))))))).......))))).)))).)))..))))))).... ( -24.50) >DroEre_CAF1 178447 113 + 1 UAUCUUACAGUUGAA-----AAUUGAAUCCUGUAUGUAGAU--ACGGGAACUCUUCUUGACUUGGGAAACCCAUUUUAGCCAAGUAACCCCUUUUUCUUUACAUCAAGAUUCAAUUGAAU .......((((((((-----..((((.((((((((....))--))))))..........((((((.(((.....)))..))))))..................))))..))))))))... ( -27.40) >DroYak_CAF1 183237 107 + 1 UAUCUAAUAGUUGAAAUUUAAAUUGAAUCCUGUACGUAGAC--ACGGGAAUUCUUUUAGAUUUGGAAAACCUAUUU-AG----------CAUUUUCCUUUACACCGAGUUUCAAUUGAAU .......((((((((((((.((..(((((((((........--))))).))))..))......((((((.((....-))----------..))))))........))))))))))))... ( -21.60) >consensus UAUCUAA_______A_____AAUUGAAUCCUGUACAUAGAU__AUGGGAAUUCUUCUAGACUUGGGAAACCUAUUUAACCCAAGUUACCCCUUUUUGUUUACAUGGAGUUUCGAUUGAAU ....................((((((.(((((((.(((((.....((((....))))......((....))......................))))).)))).)))...)))))).... ( -8.96 = -9.64 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:53 2006