Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,635,169 – 13,635,266 |
Length | 97 |
Max. P | 0.966497 |
Location | 13,635,169 – 13,635,266 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.52 |
Mean single sequence MFE | -26.14 |
Consensus MFE | -10.60 |
Energy contribution | -13.22 |
Covariance contribution | 2.61 |
Combinations/Pair | 1.16 |
Mean z-score | -3.63 |
Structure conservation index | 0.41 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13635169 97 - 20766785 CAGCAAAGAAGAGGGAUCAAAUUGUAAUUGUCAAGUCUAACGUGGAAU---CCAAAGAGGAGGAGGCCAAUAAGGAGGUGGCAGUUGCAGCUGAGGAGAA ((((......((....))....(((((((((((..(((....(((..(---((........)))..)))....)))..)))))))))))))))....... ( -31.60) >DroGri_CAF1 164540 80 - 1 CAGCUAAAAAGAAGGAUGCAGUGAUUGUGGUCAAAGCCAAUGUGGAGUCAACUAAAGAGACGGAGGCCAAAACGGAUGCA-------------------- ................((((.......(((((....((.....)).(((.........)))...))))).......))))-------------------- ( -14.44) >DroSec_CAF1 179028 97 - 1 CAGCAAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAUCCAACGUGGAAU---CCAAAGAGGAGGAGGCAAAUAAGGAGGUGGCAGUUGCAGCUGAGGAGAA ................((.((((((((((((((..(((......(..(---((........)))..)......)))..))))))))))))))...))... ( -29.60) >DroSim_CAF1 178991 97 - 1 CAGCAAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAUCCAACGUGGAAU---CCAAAGAGGAGGACGCCAAUAAGGAAGUGGCAGUUGCAGCUGACGAGAA ((((......((....))....(((((((((((..(((....(((..(---((........)))..)))....)))..)))))))))))))))....... ( -31.80) >DroEre_CAF1 174291 97 - 1 CAGCCAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAGCCAACGUGGAAU---CCAAAGAGGAGGAUGCCAAUAAGGAAGUUCCAGUUGCUGCAGAGGAAAA ...((.....((....))..((.(((((((..(...((....(((.((---((........)))).)))....))...)..))))))).))...)).... ( -20.50) >DroYak_CAF1 179049 97 - 1 CAGCAAAGAAGAGGGAUCAAGUUGUAAUUGUAAAAGCCAACGUGGAAU---CCAAAGAGGAGGAUGCCAAUAAGGAGGUGGCAGUUACAGCUGAGGAGAA ................((.((((((((((((....(((..(.(((.((---((........)))).)))....)..))).))))))))))))...))... ( -28.90) >consensus CAGCAAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAGCCAACGUGGAAU___CCAAAGAGGAGGAGGCCAAUAAGGAGGUGGCAGUUGCAGCUGAGGAGAA ...................((((((((((((.....((....(((......((.....))......)))....)).....))))))))))))........ (-10.60 = -13.22 + 2.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:52 2006