Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,633,984 – 13,634,074 |
Length | 90 |
Max. P | 0.646024 |
Location | 13,633,984 – 13,634,074 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.16 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -13.51 |
Energy contribution | -13.64 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.24 |
Mean z-score | -1.38 |
Structure conservation index | 0.63 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13633984 90 + 20766785 UUCUCCAUUGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCUGCACCG------AGGUGCUCAGAAAUUUUGUAUUUA ((((.....(((((.......((..(((((((....))))))--------------------).))...-....)))))..((((..------..))))..))))............ ( -20.94) >DroSec_CAF1 177835 90 + 1 UUAUCCAUAGACAGCCUGCCUGGUUUAUUCGCGAAUGCGGAU--------------------AUCCUUU-AAUUUUGUCCUGCACCG------AGGUGCUCAGAAAUUUUGUAUUUA .........(((((.......((..(((((((....))))))--------------------).))...-....)))))..((((..------..)))).................. ( -19.44) >DroSim_CAF1 177769 90 + 1 UUAUCCGUAGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCUGCACCG------AGGUGCUCAGAAAUUUUGUAUUUA ......((((.....))))..((..(((((((....))))))--------------------).))...-..(((((....((((..------..)))).)))))............ ( -20.90) >DroEre_CAF1 173080 93 + 1 UUCUCCUUAGACAGCGAGCCCGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCAGCACCG---ACGAGGUGCUCAAAAAUUUUGUAUUUA .............(((((...((..(((((((....))))))--------------------).))...-..(((((...((((((.---....)))))))))))..)))))..... ( -23.30) >DroYak_CAF1 177822 93 + 1 UUCUCCUUAGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCUGCACCG---ACGAGGUGCUCAAAAAUUUUGUAUUUA .........(((((.......((..(((((((....))))))--------------------).))...-....)))))..(((((.---....))))).................. ( -22.74) >DroAna_CAF1 171181 117 + 1 UUCUCCUCUAACUCUGACUCUGACUCUGGCUCUGAUUCUGAUUCUGACUCGACUCUGACUCGAUUCUACAAAUUUUGUCCAGCACUCCAUAUCGGGUGCUAAGAAAUUUUGUAUUUA ..............(((.((.((.((.((.((.((.......)).)))).)).)).)).)))....((((((.(((.(..(((((((......))))))).).))).)))))).... ( -20.90) >consensus UUCUCCUUAGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU____________________AUCCUUC_AAUUUUGUCCUGCACCG______AGGUGCUCAGAAAUUUUGUAUUUA ................................(((((((((((..................)))))......(((((....(((((........))))).))))).....)))))). (-13.51 = -13.64 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:51 2006