Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,631,496 – 13,631,593 |
Length | 97 |
Max. P | 0.993057 |
Location | 13,631,496 – 13,631,593 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.24 |
Mean single sequence MFE | -35.34 |
Consensus MFE | -21.28 |
Energy contribution | -22.36 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.13 |
Mean z-score | -3.13 |
Structure conservation index | 0.60 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13631496 97 + 20766785 CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGAGCCAUCUCGGAUGUACGGAUACGGGUA-CCGGGUACCGGGUACCCAGGUAU-- ((((((((((((.....)))))))(((((......))))).))))).((((((.((......)))))..(((((-((.(....).))))))).)))..-- ( -41.50) >DroSec_CAF1 175319 83 + 1 CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAUGUACGGAUACGGGUA---------------ACCGGGUAU-- ((((((((((((.....)))))))(((((......))))).)))))(((((((.((......)))))..((...---------------.))))))..-- ( -30.50) >DroSim_CAF1 175279 83 + 1 CCAGAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAUGUACGGAUACGGGUA---------------ACCGGGUAU-- ((((((((((((.....)))))))(((((......))))).)))))(((((((.((......)))))..((...---------------.))))))..-- ( -30.60) >DroEre_CAF1 170537 99 + 1 CCUAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGAUUCAUCUCAGAGGUACGGGUACCGGGUACCGGGUACCAGGUAU-CUGGUAUCU (((.((((((((.....))))))))((((......))))..................)))...((((((((((((((.(....).)))))-))))))))) ( -38.30) >DroYak_CAF1 175238 97 + 1 CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAGGUACGGGUGUAGGUUACCGGGUACCGGGUAC-CAGGUAU-- ....((((((((.....))))))))((((......)))).((((((((((.((...))(((((.((((.....))))..))))))))).)-)))))..-- ( -35.80) >consensus CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAUGUACGGAUACGGGUA_CCGGGUACC_GGUAACCAGGUAU__ ((((((((((((.....)))))))(((((......))))).)))))..(((((.((......)))))...(((.(((.(....).))).))).))..... (-21.28 = -22.36 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:50 2006