Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,613,417 – 13,613,510 |
Length | 93 |
Max. P | 0.500000 |
Location | 13,613,417 – 13,613,510 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.41 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -27.11 |
Energy contribution | -27.70 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.40 |
Mean z-score | -1.26 |
Structure conservation index | 0.78 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13613417 93 - 20766785 GCCGCUUUGGUGGCUACUGGCCGAAUUUCAGGCGUAGGUGUU---UGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGCUGGCGUA (((((....)))))..(..((.(((..((((((.(.((((((---((.((((...)))).....)))))))).).))))))..))).))..).... ( -39.00) >DroSec_CAF1 161195 93 - 1 GCAGCUUUGGUGGCAACUGGCCGAAUUUCGGGCGUAGGUGUU---UGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGCUGGCGUA .((((......(((.....)))(((..((((((.(.((((((---((.((((...)))).....)))))))).).))))))..))).))))..... ( -33.50) >DroSim_CAF1 161088 93 - 1 GCAGCUUUGGUGGCAACUGGCCGAAUUUCGGGCGUAGGUGUU---UGAUUGGGUGCCAGGACUGCAAGCACUGAGUUCUGAUUUUCCGCUGGCGUA .((((......(((.....)))(((..((((((...((((((---((.((((...)))).....))))))))..).)))))..))).))))..... ( -29.60) >DroEre_CAF1 156314 93 - 1 GCCGCUUUGGUGGCAACCGGCCGAAUUUCGGGCGUAGGUGCU---GGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGUUGGCGUA (((((....)))))..(((((.(((..((((((.(.((((((---(..((((...))))..)....)))))).).))))))..))).))))).... ( -37.80) >DroYak_CAF1 160907 93 - 1 GCCGCUUUGGUGGCAACCGGACGAAUUUCGGGCGUAGGUGCU---GGAUUGGGUGCCAAGACUGCAAGCAUUGAGGUCUGAUUUUCCGCUGGAGUA (((((....)))))..((((..(((..((((((.(..(((((---(..((((...))))..)....)))))..).))))))..)))..)))).... ( -35.70) >DroPer_CAF1 166329 96 - 1 GCUGCCUUGGUGGCUACGGGUCGCACCUCGGGCAUGGGGACUGAAAGAUUUGUUGCAGGUGAAGCUGACAAUGCUGUCCUCGUUCCCGCAGGCUUA ...((((..(((((.....)))))....((((.((((((((....((..(((((((.......)).)))))..)))))))))).)))).))))... ( -33.40) >consensus GCCGCUUUGGUGGCAACUGGCCGAAUUUCGGGCGUAGGUGCU___UGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGCUGGCGUA (((((....)))))..(((((.(((..((((((.(.((((((......((((...)))).......)))))).).))))))..))).))))).... (-27.11 = -27.70 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:49 2006