| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,607,861 – 13,607,951 |
| Length | 90 |
| Max. P | 0.672569 |
| Location | 13,607,861 – 13,607,951 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 88.88 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -23.04 |
| Energy contribution | -23.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.672569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13607861 90 + 20766785 AUGAAUAUGGUUACAGGGGCAAUGAACUGCUCCGAGCUCUGCUCUCCGAGCGAAGCGAGAAACGAGAGGUGAGCUACAUAGAUAGAAAGC .....((((......((((((......)))))).(((((..(((((....(.......)....)))))..))))).)))).......... ( -25.20) >DroSec_CAF1 155637 90 + 1 AUGAAUAUGGUUACAGGGGCAAUGAACUGCUCCGAGCUCUGCUCUCCGAGCGAAGCGAGAAACGAGAGGUGAGCUACAUAGAUUAAACGC .....((((......((((((......)))))).(((((..(((((....(.......)....)))))..))))).)))).......... ( -25.20) >DroSim_CAF1 154012 90 + 1 AUGAAUAUGGUUACAGGGGCAAUGAACUGCUCCGAGCUCUGCUCUCCGAGCGAAGCGAGAAACGAGAGGUGAGCUACAUAGAUUAAACGC .....((((......((((((......)))))).(((((..(((((....(.......)....)))))..))))).)))).......... ( -25.20) >DroEre_CAF1 150768 89 + 1 ACGAAUAUGGUUACAGGGGCAAUGAACUGCUCCGAGCUCUGCUCUCCGAGCGAAGCGAGAAACGAGAGGUGAGCUACAUAAAUUAAA-AC .....((((......((((((......)))))).(((((..(((((....(.......)....)))))..))))).)))).......-.. ( -25.20) >DroYak_CAF1 155350 89 + 1 ACGAAUAUGGUUACAGGGGCAAUGAACUGCUCCGAGCUCUGCUCUCCGAGCGCAGCGAGAAACGAGAGGUGAGCUACGUAAAUUCAA-UU ..((((....((((.((((((......)))))).(((((..(((((....(.......)....)))))..)))))..))))))))..-.. ( -26.50) >DroAna_CAF1 147232 82 + 1 ACGAGUAUGGCUACAGGGGCAAUGAACUGCUCCGGGCCCUGCUCUCCGAAAGAGGCGAAAAACGAGAGGUGGGCU--------UAAACAC ..(((((.((((...((((((......)))))).)))).)))))..(....)((((..(...(....).)..)))--------)...... ( -27.90) >consensus ACGAAUAUGGUUACAGGGGCAAUGAACUGCUCCGAGCUCUGCUCUCCGAGCGAAGCGAGAAACGAGAGGUGAGCUACAUAGAUUAAACGC .....((((......((((((......)))))).(((((..(((((....(.......)....)))))..))))).)))).......... (-23.04 = -23.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:48 2006