Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,593,130 – 13,593,225 |
Length | 95 |
Max. P | 0.512264 |
Location | 13,593,130 – 13,593,225 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.01 |
Mean single sequence MFE | -17.37 |
Consensus MFE | -12.34 |
Energy contribution | -12.90 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.71 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13593130 95 - 20766785 UGUUUACGCAGCAGCAGUGAUGAUCACAUUUUGUGUGGCUUAUAUAUUACGAUUAUAUAAUGGCUUGUAGUAGUUAAAACAAAUGCAUAAUACAU .......((....)).(((.....)))....(((((.(((((((((.......)))))))(((((......)))))........))...))))). ( -14.30) >DroSec_CAF1 146216 88 - 1 UGUUUACGCAGCAGCAGUGAUGAUCACAUUAUAU-------AAUGAUGAUCAUUAUAUAAAUGGUUGUAGUGAUUAAUAUAAAUACGUAAAACAU (((((.(((.(((((.(((.....))).((((((-------((((.....))))))))))...))))).))).....(((......)))))))). ( -20.40) >DroSim_CAF1 144584 88 - 1 UGUUUACGCAGCAGCAGUGAUGAUCACAUUAUAU-------AAAGAUGAUCAUUAUAUAAAUGGUUGUAGUGAUUAAUACAAAUACAUAAAACAU (((((..((....)).((((((((((..((....-------.))..))))))))))....(((.(((((........)))))...))).))))). ( -17.40) >consensus UGUUUACGCAGCAGCAGUGAUGAUCACAUUAUAU_______AAAGAUGAUCAUUAUAUAAAUGGUUGUAGUGAUUAAUACAAAUACAUAAAACAU (((((..((....)).(((.....)))...................(((((((((((........))))))))))).............))))). (-12.34 = -12.90 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006