| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,590,339 – 13,590,434 |
| Length | 95 |
| Max. P | 0.658166 |
| Location | 13,590,339 – 13,590,434 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 94.52 |
| Mean single sequence MFE | -18.57 |
| Consensus MFE | -15.56 |
| Energy contribution | -15.38 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658166 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13590339 95 - 20766785 UUUAUCCAAUGGUUGCGAAAAUCGCGCGUGCAGUCCAAAAAAAAAAGAGAAAACAACGAAACCAGUUCAAAGAAAAUCGGUGAAAAAUCGAGGAA ....(((..((((((((.....))).(((....(((..........).)).....))).)))))............(((((.....)))))))). ( -17.40) >DroSec_CAF1 143434 91 - 1 UUUAUCCAAUGGCUGCGAAAAUCGCGCGUGCAGUCCAAA----AAAGAGAAAACAACGCAACCAGUUCAAAGAAAAUCGGUGAAAAAUCGAGGAA ....(((..(((..(((.....)))((((....(((...----...).)).....))))..)))............(((((.....)))))))). ( -19.90) >DroSim_CAF1 141776 91 - 1 UUUAUCCAAUGGCUGCGAAAAUCGCGCGUGCAGUCCAAA----AAAGAGAAAACAACGCAACCAGUUCAAAGAAAAUCGGUGAAAAAUCGAGGAA ....(((..(((..(((.....)))((((....(((...----...).)).....))))..)))............(((((.....)))))))). ( -19.90) >DroEre_CAF1 138914 95 - 1 UUUGUCCAAUGGCUGCGAAAAUCGCGCGUGCAGUCCAAAACGAAAGGAGAAAACAACGAAACCAGUUCAAAGAAAAUCGGUGAAAAAUCGAGGAA ....(((..((((((((...........))))).)))...(....)..........(((......((((..(.....)..))))...))).))). ( -17.10) >consensus UUUAUCCAAUGGCUGCGAAAAUCGCGCGUGCAGUCCAAA____AAAGAGAAAACAACGAAACCAGUUCAAAGAAAAUCGGUGAAAAAUCGAGGAA ....(((..((((((((...........))))).))).......................................(((((.....)))))))). (-15.56 = -15.38 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006