Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,587,006 – 13,587,104 |
Length | 98 |
Max. P | 0.998835 |
Location | 13,587,006 – 13,587,104 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 89.92 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -30.56 |
Energy contribution | -30.78 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -2.52 |
Structure conservation index | 0.94 |
SVM decision value | 3.25 |
SVM RNA-class probability | 0.998835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13587006 98 - 20766785 U----GACGGUAUUCGCU--CGCGAUGGUAAUUGACAAUGCCAAAUGACUGACUGUGGGCCAGGCCCACAAUUAGUUCCACAUAAUGAUGCCUCAUUAUGGCCA .----...(((..(((..--..)))(((((........)))))...((((((.(((((((...))))))).))))))...((((((((....))))))))))). ( -33.30) >DroSec_CAF1 140095 100 - 1 C----GACGGUAUUCGCAUCGGCGAUGGUAAUUGACAAUGCCAAAUGACUGACUGUGGGCCAGGCCCGCAAUUAGUUCCACAUAAUGAUGCAUCAUUAUGGCCA .----...(((..((((....))))(((((........)))))...((((((.(((((((...))))))).))))))...((((((((....))))))))))). ( -35.30) >DroSim_CAF1 138453 100 - 1 C----GACGGUAUUCACAUCGGCGAUGGUAAUUGACAAUGCCAAAUGACUGACUGUGGGCCAGGCCCGCAAUUAGUUCCACAUAAUGAUGCAUCAUUAUGGCCA .----...(((.........((((.((........)).))))....((((((.(((((((...))))))).))))))...((((((((....))))))))))). ( -34.50) >DroEre_CAF1 135633 98 - 1 C----GACGUUAUUCGCU--GGCGAUGGUAAUUGACAAUGCCAAAUGACUGACUGUGGGCCAGGCCCGCAAUUAGUUCCACAUAAUGAUGCAUCAUUACGGCCA .----.............--(((..(((((........)))))...((((((.(((((((...))))))).))))))...(.((((((....)))))).)))). ( -28.80) >DroYak_CAF1 139888 98 - 1 G----AACGGUAUUCGCU--GGCGAUGGUAAUUGACAAUGCCAAAUGACUGACUGUGGGCCAGGCCCGCAAUUAGUUCCACAUAAUGAUGCAUCAUUAUGGCCA .----...(((......(--((((.((........)).)))))...((((((.(((((((...))))))).))))))...((((((((....))))))))))). ( -35.00) >DroAna_CAF1 133111 102 - 1 UCUCCCUCAUGAUUCGUA--UGCAAUGGUAAUUGACAAUGCCAAAUGGCUGAAUGUGGGCCAUGCCCGCAAUUAGUUCAACAUAAUGACGCAUCAUUAUGGCCA ..................--.((..(((((........)))))..(((((((.(((((((...))))))).)))).))).((((((((....)))))))))).. ( -28.30) >consensus C____GACGGUAUUCGCA__GGCGAUGGUAAUUGACAAUGCCAAAUGACUGACUGUGGGCCAGGCCCGCAAUUAGUUCCACAUAAUGAUGCAUCAUUAUGGCCA ....................(((..(((((........)))))...((((((.(((((((...))))))).))))))...((((((((....))))))))))). (-30.56 = -30.78 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:41 2006