Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 13,584,183 – 13,584,277 |
Length | 94 |
Max. P | 0.718285 |
Location | 13,584,183 – 13,584,277 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -26.41 |
Energy contribution | -26.63 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.17 |
Mean z-score | -1.59 |
Structure conservation index | 0.88 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13584183 94 - 20766785 ------------------CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAGGCUUCGGUCAAUUGAUGGCC ------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.00) >DroSec_CAF1 137270 94 - 1 ------------------CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAGGCUUCGGUCAAUUGAUGGCC ------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.00) >DroSim_CAF1 135678 94 - 1 ------------------CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAGGCUUCGGUCAAUUGAUGGCC ------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.00) >DroEre_CAF1 132904 94 - 1 ------------------CAGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAAGCUUCGGUCAAUUGAUGGCC ------------------........(((((.((((((((.((((((((...))))))))......(....)......))))))))....)))))..(((((.....))))) ( -27.40) >DroYak_CAF1 137030 94 - 1 ------------------CGAAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAAGCUUCGGUCAAUUGAUGGCC ------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.60) >DroAna_CAF1 129730 112 - 1 GGCAGCAGGAUGCGCCCAAGGAGGUAAGCUUGCAAUUGCACUCGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCCCGAAGCUCUUGACAAUUGAUGGGC .(((......)))(((((...(((....))).((((((((...((((((...)))))).....((((((((............))))))))......)).)))))).))))) ( -36.80) >consensus __________________CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAAGCUUCGGUCAAUUGAUGGCC ...................((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) (-26.41 = -26.63 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:40 2006